Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71180 310 / 3e-105 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 307 / 2e-104 6-phosphogluconate dehydrogenase family protein (.1) AT4G29120 301 / 9e-102 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 126 / 4e-34 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 116 / 8e-30 GR2, GLYR2 glyoxylate reductase 2 (.1) AT4G20930 94 / 1e-21 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 89 / 2e-19 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT5G41670 47 / 1e-05 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 47 / 1e-05 6-phosphogluconate dehydrogenase family protein (.1) AT3G02360 45 / 5e-05 6-phosphogluconate dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088000 [exp] 308 / 3e-104 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 125 / 3e-33 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.014G197900 [exp] 122 / 1e-32 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G465600 [exp] 96 / 2e-22 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 94 / 4e-21 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.003G135600 [exp] 52 / 3e-07 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.001G095800 [exp] 50 / 1e-06 AT5G41670 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.017G106900 [exp] 44 / 9e-05 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108880 [exp] 43 / 0.0002 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001349 [exp] 446 / 3e-159 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10015455 [exp] 285 / 1e-94 AT1G71180 243 / 2e-78 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 266 / 1e-88 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10034974 [exp] 147 / 7e-44 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1) Lus10037629 [exp] 129 / 6e-35 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 129 / 2e-33 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10034977 [exp] 105 / 7e-28 AT4G29120 232 / 2e-77 6-phosphogluconate dehydrogenase family protein (.1) Lus10012301 [exp] 101 / 6e-25 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10023258 [exp] 92 / 4e-21 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10002140 [exp] 90 / 1e-19 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03807 [poplar] [flax] F420_oxidored NADP oxidoreductase coenzyme F420-dependent CL0106 [poplar] [flax] 6PGD_C PF14833 [poplar] [flax] NAD_binding_11 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.001G211500.1 pacid=42790222 polypeptide=Potri.001G211500.1.p locus=Potri.001G211500 ID=Potri.001G211500.1.v4.1 annot-version=v4.1 ATGGAGACTCCATACCCAGAATCCATCTCTCCAGGCAAAACACGCATAGGCTGGATAGGCATAGGCGTGATGGGAGCTGCCATGGCTTCTCGCCTTCTCT CTGCTGGCTACTTTATCACCATCTATGCTCGCTCTCCGTCTAAAGCCCTTCCCTTACAATCCGAAGGAGCCCAGCTCGTCGATTCCCCTTACAAGGTCGC CAAATGCAGCGACGTTGTTTTCACCATGGTGGGACACCCATCAGATGTTCGATCAGTTGTCCTTGACACTAATCATGGCATTCTTGCAGGCCTTAATCCC GGTGGCGTCATAGTGGATTCCACCACCAGTTCGCCTGCTCAAGCACGTGAAATCTTCCAAGCTGCCAAAGCCAAAGGTTGCCATTCTATTGATTCTCCGG TTTCCGGTGGTGATATTGGTGCTAGAGATGGTAAGTTGGCCATATTTGCTGGTGGTGATCAAGTTGTTGTGAATTGGTTATCTCCTTTGTATGAGGTTTT GGGTAAAGTTACTTACATGGGTCAAGCAGGGTGTGGTCAAAGTTGCAAGATAGCAAACCAGATTGTAGTGGGTGCTAATTTGTTGGGTTTGAGTGAAGGG CTGGTTTTCGCAGATAAAGCTGGTTTGGATGCGAGGAAGTTTTTGGATGCAGTGAGGACTGGGGCCGCGGGGTCTATGGTGATGGAGTTGTTTGGGGGGA GAATGATTGATAGGGACTTTAAGGCTGGTGGTTTTGCTGAATATATGGTGAAAGATATGGGAATGGGCGTGGATGTTGTGGAGGAAAGTGAGGATGAGAG GGTGCCTGTCTTGCCTGGTGCTGCTTTGGGTAAGCAGTTGTTTGCTGGGATGGTAGCAAATGGAGATGGGAATCTTGGCACTCAAGCTCTTATAACTGTC ATAGAGAGGCTGAATGGCAAGTAA
AA sequence Show only first row Show all	>Potri.001G211500.1 pacid=42790222 polypeptide=Potri.001G211500.1.p locus=Potri.001G211500 ID=Potri.001G211500.1.v4.1 annot-version=v4.1 METPYPESISPGKTRIGWIGIGVMGAAMASRLLSAGYFITIYARSPSKALPLQSEGAQLVDSPYKVAKCSDVVFTMVGHPSDVRSVVLDTNHGILAGLNP GGVIVDSTTSSPAQAREIFQAAKAKGCHSIDSPVSGGDIGARDGKLAIFAGGDQVVVNWLSPLYEVLGKVTYMGQAGCGQSCKIANQIVVGANLLGLSEG LVFADKAGLDARKFLDAVRTGAAGSMVMELFGGRMIDRDFKAGGFAEYMVKDMGMGVDVVEESEDERVPVLPGAALGKQLFAGMVANGDGNLGTQALITV IERLNGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71180			6-phosphogluconate dehydrogena...		Potri.001G211500 [exp]	0	1
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Potri.001G113250 [exp]	6.48	0.9070
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	7.07	0.9320
AT1G68300			Adenine nucleotide alpha hydro...		Potri.010G123200 [exp]	10.58	0.8910
AT5G43060			Granulin repeat cysteine prote...		Potri.007G047600 [exp]	11.91	0.9297
AT2G17710			unknown protein		Potri.005G107800 [exp]	14.14	0.8942
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Potri.013G093500 [exp]	16.34	0.9211
					Potri.004G178101 [exp]	18.70	0.8930
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	19.28	0.9133
AT5G60750			CAAX amino terminal protease f...		Potri.003G133800 [exp]	19.33	0.8987
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.002G187200 [exp]	19.89	0.8962

Compare expression of checked genes

Potri.001G211500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.