Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71190 420 / 2e-149 TTN4, SAG18 senescence associated gene 18 (.1.2) AT5G11870 270 / 1e-90 Alkaline phytoceramidase (aPHC) (.1), Alkaline phytoceramidase (aPHC) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228700 [exp] 270 / 1e-90 AT5G11870 343 / 1e-119 Alkaline phytoceramidase (aPHC) (.1), Alkaline phytoceramidase (aPHC) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001354 [exp] 452 / 4e-162 AT1G71190 414 / 2e-147 senescence associated gene 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF05875 [poplar] [flax] Ceramidase Ceramidase
Representative CDS sequence Show only first row Show all	>Potri.001G211600.2 pacid=42788126 polypeptide=Potri.001G211600.2.p locus=Potri.001G211600 ID=Potri.001G211600.2.v4.1 annot-version=v4.1 ATGAATAAACGCAGCGTTTGCGGATGGGTAGTAGCGATTTTGTGCTTCATAATACTCATGGTGGTGACTCCAGCCATTCCTCAATCTCAAGAATACCACA ACTTTGCTGATCAGCGTGATTTGTTCTTCGGGATACCGAATACACTTAATGTGGTTTCGAATTTCCCATTCCTTGTAATTGGTGTGATTGGCCTTGTTCT CTGTCATTATCGCAATTATTTTCAACTCAGGTTGCCAGGTGAGGTATGGGGCTGGACATGTTTTTTCGTAGGTGTGGCTGCTGTTGCTTTTGGCTCTGGC TATTACCATCTTAAGCCTGATGATGATCGTCTTGTCTGGGATCGCTTGCCTATGACTGTTGCTTTCACTTCAATTGTTGCCATTTTTATCCTTGAAAGGA TTGATGAGCGAAAGGGAACTGTTTCCATTATCCCTCTGCTTTTGGCTGGTGTTATTAGCATTGCTTATTGGAGATTTTTTGATGACCTCCGTCCGTATGC TCTAGTTCAGTTTGTTCCTTGTATTGCCATTCCGCTAATGGCTATTTTGTTGCCTCCAATGTACACTCATTCCTTGTATTGGCTTTGGGCAGCAGGGTTT TATCTTTTAGCTAAGGTGGAAGAAGCTGCAGATAAACCCATATACAAGTGGACTCACCATATAGTTAGTGGACACACTCTGAAGCATTTATGTGCTGCAA TGGTTCCTGTTTTCTTGACACTTATGCTGGCAAAGAGAAGTATTGAAATAGAAAGGATAAGTCTTTTCCAGACGTGGAAGATTTCCTGGACCAGGATCAG AAAGAATGATTCAGAGGTAGAGAACTACTCTTCTACTTACACGAGTGTTCCAGTTGTAGAAACACCTTAA
AA sequence Show only first row Show all	>Potri.001G211600.2 pacid=42788126 polypeptide=Potri.001G211600.2.p locus=Potri.001G211600 ID=Potri.001G211600.2.v4.1 annot-version=v4.1 MNKRSVCGWVVAILCFIILMVVTPAIPQSQEYHNFADQRDLFFGIPNTLNVVSNFPFLVIGVIGLVLCHYRNYFQLRLPGEVWGWTCFFVGVAAVAFGSG YYHLKPDDDRLVWDRLPMTVAFTSIVAIFILERIDERKGTVSIIPLLLAGVISIAYWRFFDDLRPYALVQFVPCIAIPLMAILLPPMYTHSLYWLWAAGF YLLAKVEEAADKPIYKWTHHIVSGHTLKHLCAAMVPVFLTLMLAKRSIEIERISLFQTWKISWTRIRKNDSEVENYSSTYTSVPVVETP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Potri.001G211600 [exp]	0	1
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Potri.010G164300 [exp]	1.00	0.9024	VTI12.2
AT4G16566		HINT4	histidine triad nucleotide-bin...		Potri.003G076400 [exp]	2.82	0.8768
AT1G65020			unknown protein		Potri.013G079101 [exp]	5.09	0.8450
AT1G04555			unknown protein		Potri.010G064500 [exp]	5.74	0.8956
AT1G65020			unknown protein		Potri.013G079201 [exp]	6.00	0.8962
AT5G58005			Cytochrome c oxidase, subunit ...		Potri.018G109400 [exp]	8.48	0.8667
AT3G50845			Protein of unknown function (D...		Potri.005G123100 [exp]	10.95	0.8424
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	11.83	0.8728	Pt-ARF1.7
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.015G126301 [exp]	12.72	0.8703
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.012G070500 [exp]	15.49	0.8577

Compare expression of checked genes

Potri.001G211600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.