Plant FIBer expression Database

Potri.001G211700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G60995 694 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033791
[exp]
899 / 0 AT1G60995 815 / 0.0 unknown protein
Lus10014638
[exp]
877 / 0 AT1G60995 808 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09746 Membralin Tumour-associated protein
Representative CDS sequence
>Potri.001G211700.1 pacid=42792466 polypeptide=Potri.001G211700.1.p locus=Potri.001G211700 ID=Potri.001G211700.1.v4.1 annot-version=v4.1
ATGGATACAGAGCAGACATTCATAAGGGTTCAAGAAAGGTTCTCTCAGATGCTAACCCCAAAAGTCAGGGCTGCTTTTGAGTATATGTATCTGTTCATTG
CCATCACTCTTTTTTGCATCCTTGTTGTTATGCACGCCAATTATGTCCAACAGCCTGGATGTTCAAGTCAGCTATCTGGGGTTGAAACACGGGAAGCCCA
GCTTATTCAAATCAAGATAACTAGTGCAGGTTTGTGGTCACAGAATGAGTCTGAATCTAATGTGTTTATTGATCATGATGGTGATCATGATGGTGATCAT
GATGATGTTCCTGATGGTGATCACGTGGTCAATGCTGTAACCGATCACCAAGTTGAATTGCCGATTGCCGATCAAGGAGATGGAGGGGACCCCTTTTTGG
CTGCAAAGATGTGGTTTAATTGGATTGGTTCTGGTGCTCGTAAGGGCAAACTGGATTTCGAGTTCTGGAAAACTACTGATGTTGAACATCATCAACAAGA
TAATACTGAAAGCTCTAGTTTGCCTGTACTTGATAATGTTCCACCTGCTGCTTCTGCTAAAACGGATAAACTAGACACACGCAGTAGCTTTCCTATATCA
GCCAAGGAAACTGTTAAAGCAGCCATCAACCATTTTGGCAAAAAGTGGCACCGGCGTTTATCTTTCATTTGGAGACTCGCTAAGCAAATCTTACGAGGTT
TCCAGAAGTTGTGGGATATTACAGGCATACATGTAAACCTTGATGTTCCTAAGTGGCTGAGAATACTTTACCTGGACAGGCTTAACTCTTTCGCTGTGCA
ATGGCTTGAGAAGAAGAATAAAGCATTTGAACCAACTTTTTTATACACCATGGAAAAGGGTTTCTTCTTGCTACCTGAAGAAGCCAAGTCTCGGCATAAT
ATACGTACTGCTAACATTAGTATATCAGCCCGGCATCCCTGCTTTGGAAACAGGTGGCAGCAACTTCTCATAAACAGACTTGTTGGATATGACACCATAC
TGATGAATAGTTTATTGAGTTCTCCTGGTCAAGGTTACCTTTATAATTTCCAAACAAAAGAGTTTTATAATCTTAGTTATGCGCAAGAGCCGCAGGAAGG
CCCTGCAAAATTTGGAGACTATCTTGTGACCAAGTGTGGCGTGCTTATGATGTCACTGTTTGTTTTCTTTACCACAACGATGTCAGTGTCATTTACATTG
AGAGAGACACAAACACGTATGCTGAAATTTACAGTGCAGCTTCAGCACCATGCTCGACATCGGCTACCAACCTTTCAGCTGATCTTTGTCCATGTGATTG
AGTCACTCGTATTTGTACCTATAATGATTGGTATCTTATTTTTTCTGTTCGAGTTTTACGATGATCAGCTATTGGCTTTCATGGTCTTAATCCTTGTTTG
GTTGTGTGAACTGTTCACATTGATCAGTGTCCGCACGCCAATATCAATGAAGTTCTTTCCTCGTTTCTTTTTGCTATATTTTCTGGTTTTCCACATCTAC
TTCTTCTCCTATGCTTATGGCTTTTCATATTTGGCTCTCTCCACAACTGCAGCATTTATGCAACACCTCATCCTATACTTCTGGAACCGTTTCGAGGTAC
CAACTCTACAAAGGTTCATGCAAAACCGGCGTTCACAGCTTCAGCAACACCCAGACTTCCATATCACCTCTTCTACCATCCTTGCTTCGACTGTACACAT
CACTAGATTGAACACTAGGAACCCAGGTTCAGTTAATGCAGACATGGCTTCTGGGCCTGCATTAAGACCTGGACCTGACCAAGCAATACCTGCCAATGGA
ATAGGAGCTCCTGGGCTTGAACAACCCTTGGAAAATGACATCCGAGAGAGAGTAGATAATCCTATGCAGAATCCAGGTCAAGCGGATCTTCAGCAATCAG
AAACCAATCCCAACTCCGGGTCCATGAATTCGTTTAGCTCACTGTTGCTGTGGATCCTAGGAGGGGCTTCCTCTGAAGGTTTCAACTCATTTCTTTCCAT
TTTTAGAGATGTGAGAGATCAAGGACAAGTTTATGCTGAATCTCCCAGACCTGAAAACCGGGAAACTCAAGATGCCCAGCAATAG
AA sequence
>Potri.001G211700.1 pacid=42792466 polypeptide=Potri.001G211700.1.p locus=Potri.001G211700 ID=Potri.001G211700.1.v4.1 annot-version=v4.1
MDTEQTFIRVQERFSQMLTPKVRAAFEYMYLFIAITLFCILVVMHANYVQQPGCSSQLSGVETREAQLIQIKITSAGLWSQNESESNVFIDHDGDHDGDH
DDVPDGDHVVNAVTDHQVELPIADQGDGGDPFLAAKMWFNWIGSGARKGKLDFEFWKTTDVEHHQQDNTESSSLPVLDNVPPAASAKTDKLDTRSSFPIS
AKETVKAAINHFGKKWHRRLSFIWRLAKQILRGFQKLWDITGIHVNLDVPKWLRILYLDRLNSFAVQWLEKKNKAFEPTFLYTMEKGFFLLPEEAKSRHN
IRTANISISARHPCFGNRWQQLLINRLVGYDTILMNSLLSSPGQGYLYNFQTKEFYNLSYAQEPQEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTL
RETQTRMLKFTVQLQHHARHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIY
FFSYAYGFSYLALSTTAAFMQHLILYFWNRFEVPTLQRFMQNRRSQLQQHPDFHITSSTILASTVHITRLNTRNPGSVNADMASGPALRPGPDQAIPANG
IGAPGLEQPLENDIRERVDNPMQNPGQADLQQSETNPNSGSMNSFSSLLLWILGGASSEGFNSFLSIFRDVRDQGQVYAESPRPENRETQDAQQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G60995 unknown protein Potri.001G211700
[exp]
0 1
AT5G43100 Eukaryotic aspartyl protease f... Potri.014G020200
[exp]
4.24 0.7322
AT3G26000 Ribonuclease inhibitor (.1) Potri.001G337300
[exp]
5.83 0.7814
AT1G07540 MYB TRFL2 TRF-like 2 (.1) Potri.001G241600
[exp]
10.95 0.7180
AT4G17570 GATA GATA26 GATA transcription factor 26 (... Potri.001G151700
[exp]
16.37 0.7659
AT5G53150 DNAJ heat shock N-terminal dom... Potri.001G057200
[exp]
19.89 0.7461
AT3G63220 Galactose oxidase/kelch repeat... Potri.005G211700
[exp]
20.00 0.6882
AT5G20660 Zn-dependent exopeptidases sup... Potri.008G039400
[exp]
22.13 0.6714
AT4G33890 unknown protein Potri.009G090400
[exp]
23.97 0.7042
AT4G33430 SERK3, RKS10, E... RECEPTOR KINASES LIKE SERK 10,... Potri.001G206700
[exp]
38.34 0.6630
AT5G64430 Octicosapeptide/Phox/Bem1p fam... Potri.009G080200
[exp]
42.32 0.7235

Potri.001G211700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.