Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22030 291 / 2e-97 unknown protein AT1G77855 272 / 4e-90 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G018700 [exp] 483 / 6e-173 AT1G22030 266 / 2e-87 unknown protein Potri.002G090300 [exp] 380 / 1e-132 AT1G22030 360 / 2e-124 unknown protein Potri.005G170700 [exp] 372 / 2e-129 AT1G22030 358 / 9e-124 unknown protein Potri.019G084400 [exp] 48 / 3e-06 AT1G77855 47 / 5e-06 unknown protein Potri.002G162600 [exp] 44 / 9e-05 AT2G46080 456 / 7e-162 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019943 [exp] 263 / 4e-86 AT1G22030 241 / 9e-78 unknown protein Lus10015473 [exp] 137 / 7e-39 AT1G22030 100 / 2e-25 unknown protein Lus10036385 [exp] 45 / 3e-05 AT2G46080 434 / 4e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G211900.1 pacid=42787669 polypeptide=Potri.001G211900.1.p locus=Potri.001G211900 ID=Potri.001G211900.1.v4.1 annot-version=v4.1 ATGGATCCTTCATGCAACCTTTCTGTCAATGGCTTCTACAACTTGCTTACAAGAGAACTTGATGAACTTGATCAGAGTTTCCTATCTCATAACTTCATCT CGATTCAATTCCTTTCGAAAGTTCTATCCTCTCTCCAATCATTTTATTCCCAGATAACCACTCTGGTTCAAAAGCTTCACCTCCCCGTAGGAGAAAAGTG GCTTGACGAGTACATGGATGAAAGCTCCAGGCTCTGGGAAGCCTGTCATGTGCTCAAATCAGGTGTTTTAGGAATGGAAAATTATCACTCTTCCGGCACC AATATAACATCCTCTATCGATGGCTTTCATCCCCATTTGAATGCACAGGTTTCACGTCAGGTTATTCGTGCAATCATGGGTTGTCAAAGGGAAATAAGAG GGTTGGAAGAGGATAATAAGAGCTTGATAGAAACAAGAGTTGAAGCATTATCACTGCAGTTTGAAGGAAACAAAAGAAACATGGTAATGACTGATCAATC GAGCTGGTTCAACTCATTCAATGGGTTTCGAGGTGTTCTGTACGCAATGAGGATTGTCAACTCACTGCTCCTAATGATCCTGTTTGCTGGGCTAGTATAC TGTTGGCCTTCTTCTTGGCAAGATGCAGCTGATCAGTGTGAGGAGGCTGGTTCAGCCTTTATGGCTTCAATGGCAAGGTTGCAGCGAAGAGTAGCAAGTG AGATGGAACAAATTGGTGGGCAATCATCAGCTTCAGAAGGGATCATGCTTTATGAGTTTAGGCAAGCCAAGATTGCAATGGAAGAGCTCAAAGTAGAGCT GGAGAGTACTGTTGTGGATGATCAGTATGAATTAGAAATTGACATTCAGGACAAAGTTGACAGATTGAGGAGTTGCTTTGGATTGTTGGCATGTGGGGTT GAGTCCATAATTGGACAACTCGATGATTTCTTTGATGAAATAGTTGAAGGGAGAAAGAAGCTTTTGGGCATGTGCACTCATCAGCCTAGGTAG
AA sequence Show only first row Show all	>Potri.001G211900.1 pacid=42787669 polypeptide=Potri.001G211900.1.p locus=Potri.001G211900 ID=Potri.001G211900.1.v4.1 annot-version=v4.1 MDPSCNLSVNGFYNLLTRELDELDQSFLSHNFISIQFLSKVLSSLQSFYSQITTLVQKLHLPVGEKWLDEYMDESSRLWEACHVLKSGVLGMENYHSSGT NITSSIDGFHPHLNAQVSRQVIRAIMGCQREIRGLEEDNKSLIETRVEALSLQFEGNKRNMVMTDQSSWFNSFNGFRGVLYAMRIVNSLLLMILFAGLVY CWPSSWQDAADQCEEAGSAFMASMARLQRRVASEMEQIGGQSSASEGIMLYEFRQAKIAMEELKVELESTVVDDQYELEIDIQDKVDRLRSCFGLLACGV ESIIGQLDDFFDEIVEGRKKLLGMCTHQPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22030			unknown protein		Potri.001G211900 [exp]	0	1
AT2G30540			Thioredoxin superfamily protei...		Potri.002G208400 [exp]	1.00	0.9642	PtrGrx9
					Potri.012G086200 [exp]	2.82	0.9597
AT3G07510			unknown protein		Potri.014G176300 [exp]	3.00	0.9527
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.001G083900 [exp]	5.29	0.9358
AT1G05990		RHS1 ,RHS2	ROOT HAIR SPECIFIC 1, EF hand ...		Potri.008G079132 [exp]	5.91	0.9449
					Potri.012G085901 [exp]	6.32	0.9281
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G142100 [exp]	6.32	0.9345	Pt-ARF1.5
AT4G26470			Calcium-binding EF-hand family...		Potri.002G126900 [exp]	6.70	0.9219
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121100 [exp]	9.48	0.9027	CYP81B5,IFS1.33
AT1G70840		MLP31	MLP-like protein 31 (.1)		Potri.017G051100 [exp]	10.81	0.9295	Pt-MSG.2

Compare expression of checked genes

Potri.001G211900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.