Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SHMT9
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36370 797 / 0 SHM7 serine hydroxymethyltransferase 7 (.1) AT1G22020 791 / 0 SHM6 serine hydroxymethyltransferase 6 (.1) AT4G13930 612 / 0 SHM4 serine hydroxymethyltransferase 4 (.1) AT4G13890 600 / 0 SHM5, EDA36, EDA37 SERINE HYDROXYMETHYLTRANSFERASE 5, EMBRYO SAC DEVELOPMENT ARREST 36, EMBRYO SAC DEVELOPMENT ARREST 37, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37930 498 / 3e-172 SHMT1, STM, SHM1 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) AT4G32520 480 / 5e-165 AtSHMT3, SHM3 serine hydroxymethyltransferase 3 (.1.2) AT5G26780 476 / 1e-163 SHM2 serine hydroxymethyltransferase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090200 [exp] 804 / 0 AT1G36370 809 / 0.0 serine hydroxymethyltransferase 7 (.1) Potri.005G170800 [exp] 804 / 0 AT1G36370 837 / 0.0 serine hydroxymethyltransferase 7 (.1) Potri.017G059300 [exp] 627 / 0 AT4G13930 868 / 0.0 serine hydroxymethyltransferase 4 (.1) Potri.001G320400 [exp] 627 / 0 AT4G13930 874 / 0.0 serine hydroxymethyltransferase 4 (.1) Potri.006G232300 [exp] 493 / 4e-170 AT4G32520 869 / 0.0 serine hydroxymethyltransferase 3 (.1.2) Potri.002G109200 [exp] 486 / 2e-167 AT5G26780 904 / 0.0 serine hydroxymethyltransferase 2 (.1.2.3) Potri.010G254700 [exp] 478 / 4e-164 AT4G37930 918 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) Potri.008G002900 [exp] 475 / 4e-163 AT4G37930 933 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019942 [exp] 876 / 0 AT1G36370 817 / 0.0 serine hydroxymethyltransferase 7 (.1) Lus10015471 [exp] 875 / 0 AT1G36370 819 / 0.0 serine hydroxymethyltransferase 7 (.1) Lus10043157 [exp] 634 / 0 AT4G13930 865 / 0.0 serine hydroxymethyltransferase 4 (.1) Lus10022557 [exp] 633 / 0 AT4G13930 874 / 0.0 serine hydroxymethyltransferase 4 (.1) Lus10028218 [exp] 485 / 5e-167 AT5G26780 903 / 0.0 serine hydroxymethyltransferase 2 (.1.2.3) Lus10042923 [exp] 478 / 2e-164 AT4G37930 881 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) Lus10005916 [exp] 474 / 2e-162 AT4G32520 823 / 0.0 serine hydroxymethyltransferase 3 (.1.2) Lus10039629 [exp] 472 / 8e-162 AT4G37930 933 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) Lus10029559 [exp] 471 / 1e-161 AT4G37930 900 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) Lus10022391 [exp] 472 / 2e-161 AT4G32520 828 / 0.0 serine hydroxymethyltransferase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00464 [poplar] [flax] SHMT Serine hydroxymethyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G212000.4 pacid=42787639 polypeptide=Potri.001G212000.4.p locus=Potri.001G212000 ID=Potri.001G212000.4.v4.1 annot-version=v4.1 ATGGACTCTAAATTAAATCTAGGGTTTCACCGTACACAAATAGCCGACGATTCAATCTCTCTCCAGCTCGACTCCAGCCTCCGCGACCTCCCCACCGCAA ACCCGGTTTCACCCGTTCCTCTCCAATTGCTCGAGCCACTGACCGAGTCTCACTACTGCAATAACCAAAACGGAGAGAAAGAAGAAGACGACGATGACAG AGATGTCGAGGAGTTTAGGATATTAGGGCACTCTTTGTGTTTCAAACGCCGAAGAGAGAGCGATTCTTTGACGAGCAATAAAAGAGATGCATCCTCCTCT TCTAATGGATTGGATGTTGAAGAGCGCAGGAGTCTTGTCAAAACATGGGGGAACCAGCCGCTAAGCGCGGCGGATTCGGAGATTTTTGAGATAATGGAGA AAGAGAAAGAGAGGCAGTTTAAAGGGATTGAATTGATTGCGTCGGAGAATTTTGTATGTAGAGCGGTAATGGAGGCTCTTGGAAGTCATTTAACGAATAA GTATTCGGAGGGAATGCCTGCAGCGCGATATTATGGTGGGAATCAGTACATTGATGAGATTGAACTGCTGTGTTGTAAGAGAGCACTGGAGGCTTTTGGT TTGGATTCTGAGAGTTGGGGAGTAAATGTGCAGCCGTATTCGTGTACTTCGGCTAATTTCGCTGTGTATACTGGGTTGTTGTTGCCGGGGGATAGGATTA TGGGGTTGGACACACCATCTGGAGGGAATACGAGTCATGGCTATTATACCCCTCATGGGCGGAAGGTTTCCGGTGCATCTATTTTCTTCGAGAGTTTGCC TTATAAGGTCAATCCTCAAACTGGGTATATTGATTTCGATAAGTTAGAGGAGAGGGCACTTGATTTTAGGCCAAAAATACTCATTTGTGGTGGTAGCTCG TATCCAAGGGAGTGGGGTTATGCGAGGTTAAGGCATATCGCAGATAAGTGTGGTGCTGTGCTTATGTGTGATATGGCACAGATTAGTGGTCTTGTTGCTG CTAAGGAATGTCTGAACCCCTTTGTTTACTGTGATATTGTTACCTCAACAACCCATAAAAGTCTTCGAGGTCCAAGGGGAGGCATCATTTTCTACAGGAA GGGTACAAAACCAAGGAAAAGGGGGATCCATCTAGGTCAAGGAGATGAGAGTGATCAATATGATTTCGAGGAAAAGATTAATTTTGCTGTTTTTCCATCA TTGCAAGGTGGACCACATAATAACCACATTGCTGCTCTTGCCATAGCCTTTAAACAAGTGGCTACCCCTGAGTACAAGGCATACATGCAACAGGTGAAGA AAAACGCACAGTATTTAGCAGCTGCTTTGCTGAGAAGAAAATGCAGGCTAGTAACTGGAGGCACAGATAACCATTTGCTACTCTGGGATCTCAGGCCTTT GGGATTAACAGGTAAAGCTTATGAAAAGGTCTGCGAGTTGTGCCACATCACAGTAAATAAAATTGCTATTTTTGGGGAGAATGGAACTATTACTCCTGGA GGTGTAAGGATTGGTACTCCTGCCATGACTTCAAGAGGTTGTCTGGAATCTGATTTTGAGACAATTGCTGATTTTCTCCTGAAAGCTGCACATATTGCTT GTATGGTGCTGCGTGAACATGGGAAGCTGCAGAAGGCTTTCATGAATGGTCTGCAAACCAAGAAAGAAATTTTAGAGCTCCAGAAGCAAGTTGAAAATTT TGCAACTCAGTTTGCAATGCCAGGTTTTGACATGTGA
AA sequence Show only first row Show all	>Potri.001G212000.4 pacid=42787639 polypeptide=Potri.001G212000.4.p locus=Potri.001G212000 ID=Potri.001G212000.4.v4.1 annot-version=v4.1 MDSKLNLGFHRTQIADDSISLQLDSSLRDLPTANPVSPVPLQLLEPLTESHYCNNQNGEKEEDDDDRDVEEFRILGHSLCFKRRRESDSLTSNKRDASSS SNGLDVEERRSLVKTWGNQPLSAADSEIFEIMEKEKERQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPAARYYGGNQYIDEIELLCCKRALEAFG LDSESWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDTPSGGNTSHGYYTPHGRKVSGASIFFESLPYKVNPQTGYIDFDKLEERALDFRPKILICGGSS YPREWGYARLRHIADKCGAVLMCDMAQISGLVAAKECLNPFVYCDIVTSTTHKSLRGPRGGIIFYRKGTKPRKRGIHLGQGDESDQYDFEEKINFAVFPS LQGGPHNNHIAALAIAFKQVATPEYKAYMQQVKKNAQYLAAALLRRKCRLVTGGTDNHLLLWDLRPLGLTGKAYEKVCELCHITVNKIAIFGENGTITPG GVRIGTPAMTSRGCLESDFETIADFLLKAAHIACMVLREHGKLQKAFMNGLQTKKEILELQKQVENFATQFAMPGFDM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	0	1	SHMT9
AT3G05700			Drought-responsive family prot...		Potri.014G125500 [exp]	1.73	0.8623
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Potri.002G117000 [exp]	2.00	0.8915
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	4.69	0.8731
AT5G66810			unknown protein		Potri.005G137100 [exp]	8.30	0.8264
AT3G06270			Protein phosphatase 2C family ...		Potri.010G028300 [exp]	9.48	0.8366
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.010G229700 [exp]	9.79	0.8588
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.006G214800 [exp]	10.58	0.8417
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.001G357800 [exp]	10.95	0.8554
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	11.83	0.8509
AT5G13950			unknown protein		Potri.014G144100 [exp]	12.36	0.8484

Compare expression of checked genes

Potri.001G212000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.