Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27940 96 / 1e-23 RING/U-box superfamily protein (.1) AT3G16720 93 / 6e-22 ATL2 TOXICOS EN LEVADURA 2 (.1) AT3G05200 93 / 1e-21 ATL6 RING/U-box superfamily protein (.1) AT4G40070 88 / 5e-20 RING/U-box superfamily protein (.1) AT2G20030 86 / 4e-19 RING/U-box superfamily protein (.1) AT1G72220 86 / 7e-19 RING/U-box superfamily protein (.1) AT5G17600 84 / 1e-18 RING/U-box superfamily protein (.1) AT5G27420 84 / 2e-18 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT5G05810 84 / 2e-18 ATL43 RING/U-box superfamily protein (.1) AT4G15975 82 / 2e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G111900 [exp] 89 / 2e-20 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 89 / 4e-20 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 88 / 8e-20 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.009G073900 [exp] 86 / 1e-19 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.008G219200 [exp] 84 / 5e-19 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.013G073500 [exp] 84 / 1e-18 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.001G279200 [exp] 83 / 1e-18 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.019G091400 [exp] 83 / 1e-18 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 82 / 1e-18 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016163 [exp] 90 / 1e-21 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10002194 [exp] 86 / 7e-20 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10004460 [exp] 87 / 1e-19 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 87 / 2e-19 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 86 / 2e-19 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 85 / 6e-19 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029794 [exp] 86 / 1e-18 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10035368 [exp] 84 / 1e-18 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1) Lus10012745 [exp] 84 / 2e-18 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10006493 [exp] 84 / 2e-18 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G212101.1 pacid=42791145 polypeptide=Potri.001G212101.1.p locus=Potri.001G212101 ID=Potri.001G212101.1.v4.1 annot-version=v4.1 ATGAAGCCCCACAACCGCAAACTACAAGTACCATACAACGATGCACCGTTCGAACACCCCATCACTCCCACTTTCCAAACCTCTAACTCCACCATACCAC CGCCACCGTTCAAAGAACCAACCACCATACCACCGCCAACAACAACTTTACAGCTACAACAGCAACAACAGTTTTATTCACGCACAGGGTTTGAACCGTC TGTAGCCTTAATAATTCTATTTCTCTTAATAGCTCTCTTCTTCATGGGATTCTTTTCTATCTACACCCGTAAGTTCTCCGTCAACCCATCACCGTCGTCG TCGTCGTCGTCGTCGTCGTCAGAGGATTTCTATAATTCTCACAGACAACGCAGCACGGGCACACCAGGGCCAGCAAGTACATCCAGCCGTCCATCCAGGG CTTCTACCAGCTCACGAATTACTCGAGGTCTTGACCCACAAGTTGTCAACTCACTGCCGGTGTACTCTTATTACCATGGTGATGTGAAGTACCAGATTGA GTGTGCTATTTGCTTGGGTGAGTTTGAGGAGAAAGAGGCTGTTAAAATGATACCAAAATGTCATCACGTGTTTCATTTGCAGTGTATTGACACGTGGCTT GAGATGCACGTGACTTGTCCTGTTTGTCGAGGGGCTCAGTTCGTTCAGGAGAAGGGCGGCGGTAACGATGGTTTGGGTGTGATTCAGGAGAGGGTTGATC AAGGTGCGAGTCAACCAGAGGCAAGATCAGAGGTTGGGAATGGTGACACGTCATTGGAGGTGAGGGGAGAAGTAATAGGTGTTCAAGCCTAG
AA sequence Show only first row Show all	>Potri.001G212101.1 pacid=42791145 polypeptide=Potri.001G212101.1.p locus=Potri.001G212101 ID=Potri.001G212101.1.v4.1 annot-version=v4.1 MKPHNRKLQVPYNDAPFEHPITPTFQTSNSTIPPPPFKEPTTIPPPTTTLQLQQQQQFYSRTGFEPSVALIILFLLIALFFMGFFSIYTRKFSVNPSPSS SSSSSSSEDFYNSHRQRSTGTPGPASTSSRPSRASTSSRITRGLDPQVVNSLPVYSYYHGDVKYQIECAICLGEFEEKEAVKMIPKCHHVFHLQCIDTWL EMHVTCPVCRGAQFVQEKGGGNDGLGVIQERVDQGASQPEARSEVGNGDTSLEVRGEVIGVQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27940			RING/U-box superfamily protein...		Potri.001G212101 [exp]	0	1
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237050 [exp]	3.87	0.8810
					Potri.010G163501 [exp]	4.12	0.8587
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	5.47	0.9138
					Potri.016G080101 [exp]	5.47	0.8703
AT4G15240			Protein of unknown function (D...		Potri.017G039500 [exp]	6.00	0.8746
AT2G18193			P-loop containing nucleoside t...		Potri.007G020600 [exp]	11.66	0.8847
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.006G231300 [exp]	16.58	0.8691
					Potri.002G220667 [exp]	16.61	0.8677
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	16.91	0.8520
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	17.97	0.8585

Compare expression of checked genes

Potri.001G212101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.