Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27900 1301 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002900 [exp] 1808 / 0 AT2G27900 1333 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009613 [exp] 1322 / 0 AT2G27900 1331 / 0.0 unknown protein Lus10000865 [exp] 1155 / 0 AT2G27900 1143 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10474 [poplar] [flax] DUF2451 Protein of unknown function C-terminus (DUF2451) CL0295 [poplar] [flax] Vps51 PF10475 [poplar] [flax] Vps54_N Vacuolar-sorting protein 54, of GARP complex
Representative CDS sequence Show only first row Show all	>Potri.001G212600.8 pacid=42793291 polypeptide=Potri.001G212600.8.p locus=Potri.001G212600 ID=Potri.001G212600.8.v4.1 annot-version=v4.1 ATGCAGCCAAATCTGTTCCCAATCGGTAGCGTGTTAGGGAATCCTTTTCTGTTAAATGCTGATTTAGGAGAAGACGGTGTTGGTTTTGGATTTGAGCGCT CCAGATTATTCTTTTTGGTTCCGTTTTTATTGTTACAAGGAGTAGGAGGAGGAGGAAGCAGCGGCGAAATGGATTTGTCTAAAGTTGGTGAGAAGATTTT GAGTTCTGTTCGCTCTGCTAGATCTCTCGGTCTCTTGCCTCTCACTATTGATCGACCTGAGGTTCCAGCTCGAGCTGCAGCAGCAGCTGCTGTTGCTCGC GTGCTTGCAGGAATGCCTCCTCATCAGCGGTTTAATCTTCCTTCAAGTTCTGAAGAACTACGATCAATATATGGAAGCATACCACAAGGTCACATGGTGG AGGAGCTGGAAGAAGACTTCTATGAAGAGGATTTTGATCCAGTTAGGCATATTCTAGAGCATGTTCCATCTGAGGAAAACGAGTTAACGTATTTTGAGGA ACAGGCCACTCTTAGATTAGCACAACTAGACAGAGTAGCAGAGCGTTTATCTCTTCATGTCATGGAGCATCATGAAGTAATGGTGAAGGGGATGAATTTG GTGAGGGAAGTAGAGAAAGATTTAAAGGTTGCTAATGTCATCTGCATGAATGGTAGAAGGCACCTGACTTCATCGATGAATGAGGTTTCTAGGGATCTTG TAGTGAATAGTAATTCCAAAAGGAAACAAACTCTCCTGGACATGCTTGCAGTATTAACTGAGCTTCATCGTGCATTGGACATGCAAGTGGCACTTGAATC CCTGGTTGAAAAAGGAAATTACTGCAAGGCATTCCAAGTCCTATCTGAGTATTTACAGCTATTAGATAGTTTCTCAGAGCTTCCAGCAATACAGGAGATG AGCCGTGGAGTTGAGGTTTGGTTGGGAAGAACCCTTCAAAAGCTGGATGCCCTTTTGCTGGGAGTGTGCCAGGAGTTCAAGGAGGAGAGTTATATAACAG TAGTTGATGCATATGCTTTAATTGGAGATATCCCTGGTCTTGCTGAAAAGTTGCAAAGCTTCTATATGCAGGAAGTTTTATCAGAAACCCACTCTGTGTT GAAGAATACTGTGCAGGAGGATCTGGAAATACAGATGCAGAACAGTAGACTTACCTACAGTGATCTAAGCCTTCAGATACCTGAATCTAAGTTCAGGCAG TGTTTGTTGAGAACATTAGCGGTCTTATTCAGGTTGATTAGTTCCTATCATGAAATCATGAACTTCCAGCTGGAGAACAAGGATTCGGCATACCAAACAT CTGACATGAAGCAGGATTCCTTAGGAAGCAATGGATCTCCCCGTGAATCTGTAGATAGAATGCTTGGTTCATCTCCTACCGAGGAATCTACAACAACGTA CATGTATTTAGATTCCAATTTTGATGCAGATGAAACTAGAAGTAATGGCGGTGAAGCATCAATCAGTGGATCTCCTTGGTATCATCTGCGAAAAGATGCG ACAGCATTTGTTTCACAAACACTTCAGCGAGGTCGAAAGAATCTTTGGCAGCTTACAACAAGCCGAGTATCAGTGTTGCTTTCTTCTGCAGTTATTAGCT CTATGAGCACACACCAATTCTTGAAAAATTATGAAGATTTGAATGTATTCATCTTGGCTGGGGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTCAGACA GAAGTTGAAGGCTGTATGCGAGAACTATTTTCTTGCATTTCATCGGCAAAATATTCATGCACTCAAAATGGTTTTGGAAAAGGAAAGTTGGCTGAAATTG CCACCAGATACAGTCCAAGCAATTAGTTTTGCTGGGCTTGTTGGCAATGGGGCTGCCCTGATAGTTCCATCTCATGGTATCTCTTCAAATGCAAAATTGC ATCACTCTAACAAATCAGTGAATTCCATTGATGCCACTATCAAAAAGAGTGGATTTACCTCTTGGATTAAAAGTGGAAATCCATTTTCTCCAAAAATAAT CTCCACTTCAGTGGAAGGCCACAGTTCATCCCTGCTTAATGGGGCACCTGCTGGTGAATATGATGGACATGCTAATGATAGTTATCACGGTGATCAGGCG TCTCCCCATAGTGGTGGTGCAAGTCATAAAAATGGAACTCCTGTTTCAGAAGATGAAAATGAAGATCTTCTTGCAGACTTCATTGATGAGGACAGTCAAC TCCCAAGTCGAATTTCAAAACCAAAAGCTCCTAAAAGTAACTTTTCACATTGTAAAGATGATGAGATATCTGCACAGACAGGATCATCTCTCTGTCTTCT CAGATCAATGGACAAGTATGCAAGGTTCATGCAGAAACTAGAAATAGTAAATGTTGAGTTTTTTAAGGGTATATGCCAGTTGTTTGAGATTTTCTTCTAT TCTGTGTTTGAAACATTTGGTCAGCAGAACTCTAATTCAAATGGAAAATCTGACCCTCTCAATTATCGGCTGAAGACTGCTATATCCAGAATTACACAAG ATTGTGACCAATGGATAAAGCCCCAGCTGACCCCTGTTTCATCCTCTTCCCCTACGTCTTTGAGTACATATATGCATGGAGATGTAACACCGGCTAGTCC TCCAAATCATGCCACATCCTTTGGTCTCAAGACCATTGTGTTGCAGGAAAGATGTGCTGCTGCTGATACCATATCTCTTGTTGCTCAAATATTACACAGA TCTAAAACCCATCTTCAGTCAATGCTTCTTCAAAATAATCCAGCTATAGTGGAAGACTTTTTTGTCCTCGTGGTGGACTCTGTACCAGATGTTATAGAGC ACTTACACCGGACCACTGCAAGATTACTTCTTCACATTAATGGGTATGTTGATCGGATAGCTAATGCTAAGTGGGAAGTAAAAGAGCTTGGTCTAGAGCA TAATGGGTATGTTGATTTACTTTTGGGAGAGTTTAAGCACTATAAAACGAGGCTTGCACATGGTGGAATTCACAAAGAGGCACAAGACCGTCTTTCAGAA TATGGTGTTGAAATCGTTGCTGAAACCCTCATAGAAGGTCTATCACGGGTGAAGAGGTGTAGTGATGAAGGACGAGCTCTTATGTCATTAGATCTTCAGG TTTTGATCAATGGCCTCCAGCATTTTGTCCCCGTAAATGTAAAGCCAAAATTACAAATGGTTGAAGCTTTCATAAAGGCTTACTACCTTCCAGAAACCGA GTATGTACACTGGGCTCGTGCTCACCCGGAATACACCAAAAATCAAATTGTTGGGTTGATCAATCTCGTTGCTGCAATGAAAGGTTGGAAGAGAAAAACC AGGTTGGAAGTGATCGAGAAAATTGAGTGA
AA sequence Show only first row Show all	>Potri.001G212600.8 pacid=42793291 polypeptide=Potri.001G212600.8.p locus=Potri.001G212600 ID=Potri.001G212600.8.v4.1 annot-version=v4.1 MQPNLFPIGSVLGNPFLLNADLGEDGVGFGFERSRLFFLVPFLLLQGVGGGGSSGEMDLSKVGEKILSSVRSARSLGLLPLTIDRPEVPARAAAAAAVAR VLAGMPPHQRFNLPSSSEELRSIYGSIPQGHMVEELEEDFYEEDFDPVRHILEHVPSEENELTYFEEQATLRLAQLDRVAERLSLHVMEHHEVMVKGMNL VREVEKDLKVANVICMNGRRHLTSSMNEVSRDLVVNSNSKRKQTLLDMLAVLTELHRALDMQVALESLVEKGNYCKAFQVLSEYLQLLDSFSELPAIQEM SRGVEVWLGRTLQKLDALLLGVCQEFKEESYITVVDAYALIGDIPGLAEKLQSFYMQEVLSETHSVLKNTVQEDLEIQMQNSRLTYSDLSLQIPESKFRQ CLLRTLAVLFRLISSYHEIMNFQLENKDSAYQTSDMKQDSLGSNGSPRESVDRMLGSSPTEESTTTYMYLDSNFDADETRSNGGEASISGSPWYHLRKDA TAFVSQTLQRGRKNLWQLTTSRVSVLLSSAVISSMSTHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKAVCENYFLAFHRQNIHALKMVLEKESWLKL PPDTVQAISFAGLVGNGAALIVPSHGISSNAKLHHSNKSVNSIDATIKKSGFTSWIKSGNPFSPKIISTSVEGHSSSLLNGAPAGEYDGHANDSYHGDQA SPHSGGASHKNGTPVSEDENEDLLADFIDEDSQLPSRISKPKAPKSNFSHCKDDEISAQTGSSLCLLRSMDKYARFMQKLEIVNVEFFKGICQLFEIFFY SVFETFGQQNSNSNGKSDPLNYRLKTAISRITQDCDQWIKPQLTPVSSSSPTSLSTYMHGDVTPASPPNHATSFGLKTIVLQERCAAADTISLVAQILHR SKTHLQSMLLQNNPAIVEDFFVLVVDSVPDVIEHLHRTTARLLLHINGYVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEAQDRLSE YGVEIVAETLIEGLSRVKRCSDEGRALMSLDLQVLINGLQHFVPVNVKPKLQMVEAFIKAYYLPETEYVHWARAHPEYTKNQIVGLINLVAAMKGWKRKT RLEVIEKIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27900			unknown protein		Potri.001G212600 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	1.00	0.9409
AT2G16405			Transducin/WD40 repeat-like su...		Potri.004G160000 [exp]	1.41	0.9366
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.009G113700 [exp]	2.64	0.9181	Pt-ALPHA.12
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.001G357600 [exp]	3.00	0.9306
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	3.16	0.9279
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	3.46	0.9071
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	4.24	0.9278
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Potri.016G023000 [exp]	6.48	0.9019
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	8.12	0.9010	Pt-SPIKE1.3
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	9.94	0.9075

Compare expression of checked genes

Potri.001G212600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.