Plant FIBer expression Database

Potri.001G212700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08190 1473 / 0 ZIP2, ATVPS41, ATVAM2 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G002400
[exp]
1731 / 0 AT1G08190 1440 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021401
[exp]
1570 / 0 AT1G08190 1431 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
Lus10005352
[exp]
1567 / 0 AT1G08190 1437 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF00637 Clathrin Region in Clathrin and VPS
Representative CDS sequence
>Potri.001G212700.1 pacid=42791326 polypeptide=Potri.001G212700.1.p locus=Potri.001G212700 ID=Potri.001G212700.1.v4.1 annot-version=v4.1
ATGACTCCAATTACGTCGGAGAATGGTGTCGATGGCGACGACGAGCGAGAAGAAGAAGAGGAAGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAGGAGGAGGAGGAGGAACCAAGACTCAAGTACCAAAGAATGGGAGGTAGCATACCTTCTCTTTTATCCAATGATGCGGCGTCGTGTATTGCTGT
AGCCGAACGCATGATTGCACTCGGCACTCTAGACGGCACCGTTCACATCCTCGATTTCCTCGGCAACCAGGTTAAGGAATTTGCGGCGCATACAGCGGCG
GTTAATGATCTTAGCTTTGATATAGAAGGAGAATATATAGGAAGTTGTTCAGACGATGGCACTGTTGTAATTAATAGTCTTTTCACCGACGAGAAAGTTT
TGAAGTTTGAATATCATCGGCCGATGAAGGCAATTGCTTTAGACCCTGAATATTCTAGAAAAATGTCTAAAAGATTTGTTGCTGGTGGTTTAGCTGGTCA
ATTGTATTTTAACTCCAAGAAATGGCTAGGTTACCGTGACCAGGTTTTGCACTCTGGGGAAGGTCCGATACATGCTGTGAAGTGGAGAACGAGTCTCATT
GCGTGGGCTAATGATGCGGGTGTGAAAGTTTATGATGCTGCTAATGATCGAAGAATAACTTTTATTGAAAGACCGCGAGGGAGTCCGCGTCCGGAGCTTT
TGCTCCCGCATTTAGTTTGGCAGGATGATACTCTCTTGGTTATTGGGTGGGGAATGTCTGTAAAAATAGCATCGATAAGAGCAAATCAGCAAAAGGGAGC
TAATGGGACATATAGGGATGTTCCGGTGTCTAGTATGAACCAGGTGGATATTGTGGCTTCTTTTCAAACCAGCTATTATATTTCAGGAATTGCTCCATTT
GGTGATTCTTTGGTTGTTCTAGCTTATATTCCTGTGGAAGAAGATGGAGAGAAGGAATTCAGTAGCACCATTTCATCAAGACTGGGCAATGCACAGAGAC
CAGAAGTACGAGTAGTTACATGGAATAATGATGAACTTGCAACAGATGCCCTACCTGTGCATGGTTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGC
GCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAATGGGCTGCTGGTGATGAACCATTATACTATATCGTTTCCCCGAAGGATGTGGTGATTGCA
AAGCCTAGGGATGCTGAAGATCATATTGCGTGGCTTCTAGAACATGGTTGGCATGAAAAAGCGTTGGCAGCAGTTGAAGCAGGCCAGGGTAGGAGTGAAC
TCGTTGATGAGGTGGGATCCAGATATCTTGATCATTTGATCGTGGAAAGGAAATATGCTGAAGCTGCATCTTTGTGTTCCAAATTGCTGCGAGGGTCTGC
TCCAGCATGGGAAAGATGGGTTTTCCATTTTGCTCATTTGCGTCAGCTTCCTGTGTTGGTCCCTTACATGCCAACAGAAAACCCTAGACTTCGTGATACT
GCTTATGAGGTTGCTCTTGTAGCTCTGGCAACAAATCCATCTTTTCATAAAGATCTCTTGTCAACTGTTAAATCTTGGCCACCTTTGATTTATTCTGCAT
TGCCTGTTATATCTGCTATAGAACCTCAGCTAAATACTTCTTCTATGACGGATGCACTCAAGGAGGCACTAGCAGAGTTATATGTAATTGATGGGCAATA
TGAGAAAGCCTTTTCACTTTTTGCTGATCTCATGAAGCCAGAGATATTTGATTTCATTGAAAAGCACAGCTTACATGATACCATACGTGAAAAGGTTGTC
CAACTGATGTTGCTTGATTGCAAACGCACAGTTCCTCTATTGATCCAGAACAAAGACTTAATTTCTCCACCTGAAGTTGTCTCGCAACTGTTGACTGCCA
GCAATAAGTGTGATTCAAGATATTTCCTACACTTGTATCTTCATGCATTATTTGAAGCAAATCCACATGCAGGAAAGGATTTTCATGATATGCAAGTAGA
GCTTTATGCAGATTATGATCTGAAAATGCTACTACCTTTTCTCCGGAGCAGCCAACATTACACCCTTGAGAAGGCATATGACATTTGTGTCAAAAGAGAT
CTTTTAAGAGAGCAAGTCTTCATACTTGGAAGAATGGGAAACTCAAAAAAGGCGCTAGCTATCATCATAAATAAATTAGGGGACATTGAAGAGGCTGTTG
AATTTGTAACCATGCAGCATGATGATGAGCTATGGGAAGAATTAATTAAGCAATGTCTTCACAAACCTGAAATGGTGGGGGTATTGTTGGAGCACACTGT
TGGCAATCTTGATCCTTTATACATTGTAAATATGGTGCCCAATGGCTTGGAAATACCCCGACTTAGGGATCGACTAGTAAAAATTATCACCGATTACAGA
ACTGAAACATCTCTGAGACATGGGTGCAATGATATTCTTAAGGCTGATTGTGTAAATCTCTTGGTCAAATACTACAAAGAAGCGAGAAGGGCAATTTGCT
TAAGCAACGAAGAAGATGCTCGAGCAAAAAGGGATGGCAGTAGGGATTCACAAGCAGCTGGGAGAACAGCAAGTGCAAGAACCATGGAGGTTAAGTCAAA
AACCAGGGGAGAAACAAGATGTTGCATGTGTTTTGATCCCTTCTCTATACGAGATGTATCAGTTGTCGCATTCTTTTGCTGTCATGCTTATCACATGTCT
TGTCTTATGGATTCTATGCACACTGTTAGTAGCGGAAAAGGGAGTGGAGCCACTTCTGGGATATCGGAATACGATAGCAATGACGAGGATGAGGAAACCG
TTTCTGGTGTTCCTCGGCTGAGATGTATCTTATGTACTACTGCTGCTAGTTGA
AA sequence
>Potri.001G212700.1 pacid=42791326 polypeptide=Potri.001G212700.1.p locus=Potri.001G212700 ID=Potri.001G212700.1.v4.1 annot-version=v4.1
MTPITSENGVDGDDEREEEEEDDDDEEEEEEEEEEEEEEEEPRLKYQRMGGSIPSLLSNDAASCIAVAERMIALGTLDGTVHILDFLGNQVKEFAAHTAA
VNDLSFDIEGEYIGSCSDDGTVVINSLFTDEKVLKFEYHRPMKAIALDPEYSRKMSKRFVAGGLAGQLYFNSKKWLGYRDQVLHSGEGPIHAVKWRTSLI
AWANDAGVKVYDAANDRRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGMSVKIASIRANQQKGANGTYRDVPVSSMNQVDIVASFQTSYYISGIAPF
GDSLVVLAYIPVEEDGEKEFSSTISSRLGNAQRPEVRVVTWNNDELATDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIA
KPRDAEDHIAWLLEHGWHEKALAAVEAGQGRSELVDEVGSRYLDHLIVERKYAEAASLCSKLLRGSAPAWERWVFHFAHLRQLPVLVPYMPTENPRLRDT
AYEVALVALATNPSFHKDLLSTVKSWPPLIYSALPVISAIEPQLNTSSMTDALKEALAELYVIDGQYEKAFSLFADLMKPEIFDFIEKHSLHDTIREKVV
QLMLLDCKRTVPLLIQNKDLISPPEVVSQLLTASNKCDSRYFLHLYLHALFEANPHAGKDFHDMQVELYADYDLKMLLPFLRSSQHYTLEKAYDICVKRD
LLREQVFILGRMGNSKKALAIIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGVLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYR
TETSLRHGCNDILKADCVNLLVKYYKEARRAICLSNEEDARAKRDGSRDSQAAGRTASARTMEVKSKTRGETRCCMCFDPFSIRDVSVVAFFCCHAYHMS
CLMDSMHTVSSGKGSGATSGISEYDSNDEDEETVSGVPRLRCILCTTAAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08190 ZIP2, ATVPS41, ... ZIGZAG SUPPRESSOR 2, vacuolar ... Potri.001G212700
[exp]
0 1
AT5G12430 TPR16 tetratricopeptide repeat 16, H... Potri.001G255000
[exp]
2.00 0.8180
AT4G38120 ARM repeat superfamily protein... Potri.001G454200
[exp]
5.74 0.8088
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Potri.003G098700
[exp]
11.00 0.7870
AT3G62360 Carbohydrate-binding-like fold... Potri.002G194000
[exp]
15.16 0.8167
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.010G227100
[exp]
16.06 0.8004
AT4G38270 GAUT3 galacturonosyltransferase 3 (.... Potri.004G206000
[exp]
16.09 0.7996
AT4G14368 Regulator of chromosome conden... Potri.008G167500
[exp]
19.23 0.7893
AT3G01380 transferases;sulfuric ester hy... Potri.001G350700
[exp]
21.49 0.7731
AT1G10700 PRS3 phosphoribosyl pyrophosphate (... Potri.010G045000
[exp]
30.59 0.7529
AT4G29940 HD PRHA pathogenesis related homeodoma... Potri.018G142400
[exp]
31.49 0.7584

Potri.001G212700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.