Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22860 371 / 5e-126 Serine carboxypeptidase S28 family protein (.1.2) AT2G24280 295 / 1e-95 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 272 / 2e-86 Serine carboxypeptidase S28 family protein (.1) AT3G28680 149 / 7e-43 Serine carboxypeptidase S28 family protein (.1) AT2G18080 89 / 4e-19 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT4G36190 85 / 1e-17 Serine carboxypeptidase S28 family protein (.1) AT4G36195 84 / 2e-17 Serine carboxypeptidase S28 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G212900 [exp] 747 / 0 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213200 [exp] 562 / 0 AT5G22860 518 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213400 [exp] 556 / 0 AT5G22860 514 / 8e-180 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 517 / 0 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 420 / 3e-144 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 415 / 3e-142 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 412 / 2e-141 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 409 / 5e-140 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 362 / 6e-122 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005354 [exp] 386 / 5e-131 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 385 / 2e-130 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10008358 [exp] 385 / 2e-130 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 374 / 2e-126 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10021325 [exp] 273 / 9e-87 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10011603 [exp] 256 / 2e-80 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10017002 [exp] 230 / 2e-71 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10039645 [exp] 127 / 8e-33 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 72 / 3e-13 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 59 / 2e-09 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05576 [poplar] [flax] Peptidase_S37 PS-10 peptidase S37
Representative CDS sequence Show only first row Show all	>Potri.001G213000.2 pacid=42793150 polypeptide=Potri.001G213000.2.p locus=Potri.001G213000 ID=Potri.001G213000.2.v4.1 annot-version=v4.1 ATGATGTTTCAAAGGCTATTTCTTCTCCAGTCTTTCTTACTGTTTTCCTTAACCACTGCCACTGCAACTGCAAAACGTCTTAATACTATTCCAAGGCATA GTCCAATAGGGCCAAGAGTTTGGCGAGACCAGCCTGATAAAACTACTTCGTGTGAAGTTGATGAAGAAGGTTTTGAAACCTGTTTTTACAACCAAACACT TGATCACTTCAACTATAGGCCTGAAAGCTATGACACATTTCCGCAACGATATGTGATCAATTCTAAGTATTGGGGTGGTGCGAATGCATCAATCTTAGTA TATCTTGGTGCAGAAGCATCGATTGATGGATATCGTGACGCTGCTGGATTTCTAGATGATAACGCTGTTCAGTTTAAGTCTCTCTTGGTATTTATTGAGC ACAGATATTATGGACACTCATTCCCACCTGGAGCATGGGGGAAACGAGGGTATTTCAGCTCAGCCCAGGCTTTAGCAGACTATGCAGCCATTATCATTGA CATAAAGGAGAATCGAAGTGCTCAATATTCTCCAGTTATCGTCATTGGAGGATCATATGGTGGAATGCTGGCTTCGTGGTTTCGGCTCAAGTACCCTCAC ATTGCCCTCGGAGCCTTGGCCTCATCAGCACCAATTCTTTATTTCGATGATATCACACCACAGGATGCATACTATTCTGTAGTCACCAAGGAATTTAGAG AAGCTAGTGAGACTTGCTACCAGACTATAAAAACGTCATGGTCAGAAATTGATGAACTTGCTTCTAAACCCGATGGTCTCTCAATGCTTAGCACGAAATT CAATACTTGCAAAAACTTGACTGATGCCAGTGAGCTCAAGGATTACTTAAGGTTAATGTATGCTTATGCTGCCCAGAACAACAGTCCACCAACATATCCA GTTAACGAGGTCTGTAAGGGCATAGATGATGATGCTTCTGGAGATGATATTCTAAGCAGAATATTTCGTGGTGTTGTTGCTTATTATGGAAACCGGACGT GCTATTTCAATAATAATGCATACGCCTACCAATCTGAAGCAACTCTGGACTGGAGTTGGCAGAGATGCAGTGAGATGGTGATACCTCTTGGTGTTGGGGA TAATTCCATGTTCCAACCAAATCCATTTAATTTGACAGACCATATAGAGCGTTGCAAGAGTTTGTATGGTGTCCGACCTCGTCCTCATTGGGTCACTACC TATTACGGAGGTCATGTATGTTCTCTTTAA
AA sequence Show only first row Show all	>Potri.001G213000.2 pacid=42793150 polypeptide=Potri.001G213000.2.p locus=Potri.001G213000 ID=Potri.001G213000.2.v4.1 annot-version=v4.1 MMFQRLFLLQSFLLFSLTTATATAKRLNTIPRHSPIGPRVWRDQPDKTTSCEVDEEGFETCFYNQTLDHFNYRPESYDTFPQRYVINSKYWGGANASILV YLGAEASIDGYRDAAGFLDDNAVQFKSLLVFIEHRYYGHSFPPGAWGKRGYFSSAQALADYAAIIIDIKENRSAQYSPVIVIGGSYGGMLASWFRLKYPH IALGALASSAPILYFDDITPQDAYYSVVTKEFREASETCYQTIKTSWSEIDELASKPDGLSMLSTKFNTCKNLTDASELKDYLRLMYAYAAQNNSPPTYP VNEVCKGIDDDASGDDILSRIFRGVVAYYGNRTCYFNNNAYAYQSEATLDWSWQRCSEMVIPLGVGDNSMFQPNPFNLTDHIERCKSLYGVRPRPHWVTT YYGGHVCSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213000 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243600 [exp]	10.24	0.9793
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	14.42	0.9793	Pt-RD22.1
AT5G54010			UDP-Glycosyltransferase superf...		Potri.011G097900 [exp]	17.74	0.9778
AT4G39830			Cupredoxin superfamily protein...		Potri.001G454700 [exp]	20.09	0.9753
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.006G064400 [exp]	21.58	0.9084
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G223200 [exp]	23.13	0.9753
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Potri.005G242800 [exp]	25.09	0.9751
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G029000 [exp]	27.11	0.9749
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.016G062700 [exp]	30.59	0.9747
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.007G103800 [exp]	32.03	0.9742	GA20ox5

Compare expression of checked genes

Potri.001G213000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.