Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22860 518 / 0 Serine carboxypeptidase S28 family protein (.1.2) AT2G24280 389 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 370 / 1e-123 Serine carboxypeptidase S28 family protein (.1) AT3G28680 164 / 8e-48 Serine carboxypeptidase S28 family protein (.1) AT4G36195 102 / 4e-23 Serine carboxypeptidase S28 family protein (.1.2.3) AT4G36190 102 / 4e-23 Serine carboxypeptidase S28 family protein (.1) AT2G18080 100 / 3e-22 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213400 [exp] 837 / 0 AT5G22860 514 / 8e-180 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 753 / 0 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 669 / 0 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 590 / 0 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 565 / 0 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213000 [exp] 561 / 0 AT5G22860 371 / 6e-126 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 561 / 0 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 553 / 0 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 468 / 2e-162 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008358 [exp] 537 / 0 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005354 [exp] 536 / 0 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 535 / 0 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 506 / 1e-176 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10021325 [exp] 352 / 3e-116 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10011603 [exp] 349 / 2e-115 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10017002 [exp] 315 / 2e-103 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10039645 [exp] 174 / 1e-49 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 81 / 6e-16 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 54 / 1e-07 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05577 [poplar] [flax] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Potri.001G213200.5 pacid=42787648 polypeptide=Potri.001G213200.5.p locus=Potri.001G213200 ID=Potri.001G213200.5.v4.1 annot-version=v4.1 ATGATGTTTCAAAGGCTATTTCTTGTCCACTTTTTCTTACTGCTTTCCTTAACCACTGCAACTGCAAAACGTCTTAATACTATTCCAAGGCTTAGTCCAA TAGGGCCAAGAGTTTGGCGAGACCAGCCTGATAAAACTACTTTGGGTGAATTTGATGGAGAAGATTTTGAAACCTTTTTTTACAACCAAACACTTGATCA CTTCAACTATAGGCCTGAAAGCTATGACAAATTTCCGCAACGATATTTGATCAATTCTAAGTATTGGGGTGGTGCGAATGTTAGTGCCCCAATCTTAGTT TTTCTTGGTGCAGAAGAACCGATTGATGAAGATCTTGCCGCTGTTGGATTTCTAGTTGATAACGCTGTTCAGTTTAATTCTCTCTTGGTGTTTATTGAGC ACAGATATTATGGAAAATCAATCCCATTTGGATCAAGGGAGGAAGCCTTGAAGGATGCAAGCAAACTAGGGTATTTCAACTCAGCCCAGGCTATAGCAGA CTATGCAGCCATTATCATTCACATAAAGGAGACACTAAGGGCTCAATATTCTCCAGTTATCGTCATTGGAGGATCATATGGTGGAATGCTGGCTTCGTGG TTTCGGCTCAAGTACCCTCACATTGCCCTCGGAGCCTTGGCCTCATCAGCACCAATTCTTTATTTTGATGATATCACACCACAGGATGGATACTATTCTA TAGTCACCAAGGACTTTAGAGAAGCTAGTGAGACTTGCTACCAGACTATAAAAACGTCATGGTCAGAAATTGATGAACTTGCTTCCAAACCCGATGGTCT CTCAATGCTTAGCAAGAAATTCAAGACTTGCAATCCCTTGACTGATGCCAGTGAGCTCAAGGATCACTTAGACACAATGTATGCTAGTGCTGCTCAGTAC AACAGGCCACCAACATATCCGGTTAACGAGGTCTGTAAGGGCATAGATGGCGGTGGTTTTGGGGATGATACTCTAAGCAGAATATTTGGTGGTCTTGTTG CTTATAATGGAAACCTCTCGTGCTATGTCAACGCACACACCGACCCATCTGAAACAACTGTGGGGTGGCAATGGCAGAAATGCAGTGAGATGGCGATACC TATTGGTGTTGGGAATAATTCCATGTTCCCACCAGATCCTTTTGATTTGAAAGACTATATAGAGCATTGCAAGAGTTTGTATGGTGTCACAACTCGTCCT CATTGGGTCACGACCTATTACGGAGGTCATAGTATAAAACTGATTCTTCAAAGGTTTGCTAGCAATATCATCTTCTCCAACGGGCTAAGAGATCCTTATA GTAGTGGAGGGGTTTTGGAGAACATTTCAGACACTGTTGTAGCTGTCAAAACCGTCAATGGGTCTCATTGCTTGGATATACTTTTTGCGGAGGAAAATGA TCCAGAATGGTTGGTCACACAGCGAAAGATAGAGATCAAGATTATTAAAGAATGGATTAATAAGTACTATGCTGATCTAACCATGTTTTAG
AA sequence Show only first row Show all	>Potri.001G213200.5 pacid=42787648 polypeptide=Potri.001G213200.5.p locus=Potri.001G213200 ID=Potri.001G213200.5.v4.1 annot-version=v4.1 MMFQRLFLVHFFLLLSLTTATAKRLNTIPRLSPIGPRVWRDQPDKTTLGEFDGEDFETFFYNQTLDHFNYRPESYDKFPQRYLINSKYWGGANVSAPILV FLGAEEPIDEDLAAVGFLVDNAVQFNSLLVFIEHRYYGKSIPFGSREEALKDASKLGYFNSAQAIADYAAIIIHIKETLRAQYSPVIVIGGSYGGMLASW FRLKYPHIALGALASSAPILYFDDITPQDGYYSIVTKDFREASETCYQTIKTSWSEIDELASKPDGLSMLSKKFKTCNPLTDASELKDHLDTMYASAAQY NRPPTYPVNEVCKGIDGGGFGDDTLSRIFGGLVAYNGNLSCYVNAHTDPSETTVGWQWQKCSEMAIPIGVGNNSMFPPDPFDLKDYIEHCKSLYGVTTRP HWVTTYYGGHSIKLILQRFASNIIFSNGLRDPYSSGGVLENISDTVVAVKTVNGSHCLDILFAEENDPEWLVTQRKIEIKIIKEWINKYYADLTMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213200 [exp]	0	1
AT1G76110	ARID		HMG (high mobility group) box ...		Potri.005G246700 [exp]	3.46	0.9479
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.009G045500 [exp]	14.49	0.9242
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.006G010000 [exp]	14.83	0.9080
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015400 [exp]	15.58	0.9284
AT1G10657			Plant protein 1589 of unknown ...		Potri.008G189100 [exp]	16.24	0.9194
AT1G03670			ankyrin repeat family protein ...		Potri.018G077766 [exp]	17.88	0.9246
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.001G317600 [exp]	20.88	0.9271
					Potri.018G011950 [exp]	24.65	0.9138
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	25.61	0.9235
AT5G37360			unknown protein		Potri.019G023700 [exp]	29.29	0.9031

Compare expression of checked genes

Potri.001G213200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.