Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27880 1214 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G48410 1118 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 1079 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G69440 560 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT2G27040 490 / 2e-158 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21150 489 / 5e-158 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT1G31280 442 / 6e-139 AGO2 argonaute 2, Argonaute family protein (.1) AT2G32940 436 / 5e-138 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT1G31290 433 / 7e-134 AGO3 ARGONAUTE 3 (.1) AT5G21030 421 / 9e-133 PAZ domain-containing protein / piwi domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G001500 [exp] 1632 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.012G037100 [exp] 1108 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 1106 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.006G118600 [exp] 1094 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.008G158800 [exp] 1089 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G081300 [exp] 1073 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G163800 [exp] 590 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.008G010500 [exp] 492 / 4e-159 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.001G219700 [exp] 491 / 6e-159 AT2G27040 1403 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031331 [exp] 1105 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 1083 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 1071 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 1070 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 1070 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10031904 [exp] 1006 / 0 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10014386 [exp] 775 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10036794 [exp] 598 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 598 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 597 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0219 [poplar] [flax] RNase_H PF02171 [poplar] [flax] Piwi Piwi domain CL0219 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0219 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute CL0219 [poplar] [flax] PF16487 [poplar] [flax] ArgoMid Mid domain of argonaute CL0219 [poplar] [flax] PF16488 [poplar] [flax] ArgoL2 Argonaute linker 2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G213700.1 pacid=42793344 polypeptide=Potri.001G213700.1.p locus=Potri.001G213700 ID=Potri.001G213700.1.v4.1 annot-version=v4.1 ATGTCTCGCCGTGGTGGTGGCCGGAGATCGTCAGAACCTCGCCCTGACCAGGGCTCCTCAACTCCGTCACCGTCTTTTCAGCGCGGTGGTGGTGGAGATC GTGGTAGAGGCCGTGGCCGGAGAGGCGGCTTCACTCCTGCTCCGTCTCCAACACCTGTTCGTGCTCCCCCCCCTGCTGCATCCGGCTACCTTTCTGCAAC CGCAGGTCCGTCCACCTCATCAACTCCCCAAGAAATGGCATCATCTTCGAATGCGCCACCGCCCTCGGCTTCGAGTTCGGCTTCGATGGAGGAGCTGAGT CAAGAGATCGCAAAAAAATTGTCATTTGGAAGTACTAGTGCGACGGGAGGGTCGGTGCCTGTGTCATCAAAGGCCATTGTGCCTCCGCCCCGGCCACAAC TTGGAAGGATAGGAAGGAAATGTACGATTAGAGCAAATCATTTTGTAGTTGAGGTTTCTGATAGAGATCTCTTTCACTACGATGTGGCAATAACTCCTGA AATTACATCGAAGAAAGTAAATAGAGATGTAATATCTCAGCTTGTTCGTTCTTATCGTGAGTCCCACCTGGGCAATAGGATGCCAGCTTATGATGGCAGG AAAAGTCTATACACTGCTGGGGCATTGCCTTTTGAAGCAAAGGAATTTGTCGTGAAGTTGGTTGAGAAGAATGATCCTGCTAGTTCATCCAGTTCTGTCA AAAAGGAACGTCAATTTAACGTGGCAATCAAATATGCATCCAAAGTTGATATGCATCATTTAAAGGAATTCCTAAGTGGCAGACAAAAGGATGTTCCACA GGAAACCATACAAATCCTTGACATTGTTCTCAGAGCATCACCATCAGAAAAGTACGTTACTGTTGGGAGGTCATTCTTCTCACTTGATTTGGGCAAAAAA GGCGAGCTTGGTAATGGAATAGAATACTGGAGAGGTTACTATCAAAGTCTTCGGCCAACCCAAATGGGACTCTCTTTAAATATTGATGTGTCAGCCAGAT CCTTTTATGAGCCAATTTTGGTGACTGAGTTTGTGGCCAAGTACTTCAATCTCAGAGACTTGTCAAGGCCTCTTTCTGATCAGGATCGTGTTAAGGTGAA AAGGGCCTTAAGAGGAATCAAAGTGGAAATTTCATACAGGGACTATGCCAGAAGCTTCAAGGTTACTGGCATATCTAATCTACCAGTAGACAAGACAATG TTTACTCTGGATGATAAGAAAACAAAGGTGTCTGTCCATCAGTATTTCTGGGACAGATACAATATTGGGCTGAAATATACATCTTTGCCTCCCCTTCAAG CCGGAACTGATGCGAAACCCATTTATTTGCCCATGGAGCTCTGTAAGATTGCTGGAGGACAGCGATACACAAAGAAACTAAATGAAAGACAAGTCACTGC ACTTTTAAGAGCTACCTGTCAACGCCCTTCTGCTAGGGAAAATAGCATTAAGGAGATGGTTGCGCATAACGATTATAGTAGGAATGTGCTTGTAAGGAAT GAATTTGGTATTCAAGTGAAAGAAGAACTAACATCGGTTGATGCCCGAGTTTTACCCCCACCCATGCTTAAATATCATGATACAGGGCGAGAAGCTAGAG TGGATCCACACTTGGGACAATGGAATATGATTAACAAGAAAATGGTGAATGGTGGCAAAATTGATTTCTGGACGTGTGTGAACTTTTCTACGAGAGTGCA GAGAGACTTGCCATTTGAATTTTGTTGGCAATTAATGGATATGTGCAACAGCAAAGGAATGGAATTCCACCCAGATCCCATTATTCAGATACATTCAGCT GATTCCAGGCATATTGAGAAGGCTCTTCATGATGTTCATAAGAAATGTACTGCAAAACTTGCAAATCAGAAGGGGAAACAGCTTCAACTGCTGATCATTA TTCTACCTGATTTCAGTGGATCCTATGGGAAAATCAAACGTATTTGTGAAACTGAGTTGGGAATAGTTTCACAATGCTGCCAGCCCCAGCAGGCAAAGAA GCTCAGCAAACAATACCTGGAAAATGTTGCTCTCAAAATTAATGTGAAGGCTGGTGGACGGAACACTGTGTTAAATGATGCTATTCAAAGAAGAATTCCT AATGTTACTGATCTTCCTACTATTATTTTTGGTGCTGATGTGACCCATCCACAGCCAGGGGAAGACTCTAGCCCGTCGATTGCAGCAGTAGTGGCTTCTA TGGACTGGCCAGAGGTAACCAAATATAGAGGACTTGTCTCTGCACAGGCTCATCGCGAGGAAATTATTCAGGATCTTTACAAAAAATATCAGGATCCACA AAAGGGTTTAGTTCACAGCGGAATGATCAGGGAGCTGTTTATTGCATTCAGAAGATCAACGGGCCAAAAACCTCATAGAATTATATTCTATAGAGATGGT GTAAGTGAAGGCCAATTCAGCCAAGTTCTGCTACATGAGATGCAGGCGATACGAGAGGCATGTGGCACCCTGGAAGAAGGATATTGTCCTCCGGTTACCT TTGTTGTAGTGCAGAAACGGCATCATACACGCTTCTTTCCTGCTGACCATAGCAAGCGAGATCTGACTGACAGGAGTGGCAATATCCTACCAGGCACGGT CGTGGACACTAAAATTTGCCACCCTACAGAGTTTGATTTCTACCTTAACAGTCACGCTGGAATTCAGGGAACTAGCAGACCTACACACTACCATGTATTG TTTGATGAAAACAACTTCACTGCTGATGGCTTACAAACCCTCACTAACAATTTGTGCTACACGTATGCAAGATGCACTCGGTCTGTTTCCATAGTGCCCC CTGCATATTACGCCCATTTGGCAGCTTTTAGGGCTCGGTATTACATTGAGGGTGAAACATCAGACAGTGGTTCTACTGGTGCGACTGGGAGGAGTGTGGA GGCCCGATCTCTTCCAGTCGTCAAAGAAAATGTCAAGGATGTTATGTTTTACTGTTGA
AA sequence Show only first row Show all	>Potri.001G213700.1 pacid=42793344 polypeptide=Potri.001G213700.1.p locus=Potri.001G213700 ID=Potri.001G213700.1.v4.1 annot-version=v4.1 MSRRGGGRRSSEPRPDQGSSTPSPSFQRGGGGDRGRGRGRRGGFTPAPSPTPVRAPPPAASGYLSATAGPSTSSTPQEMASSSNAPPPSASSSASMEELS QEIAKKLSFGSTSATGGSVPVSSKAIVPPPRPQLGRIGRKCTIRANHFVVEVSDRDLFHYDVAITPEITSKKVNRDVISQLVRSYRESHLGNRMPAYDGR KSLYTAGALPFEAKEFVVKLVEKNDPASSSSSVKKERQFNVAIKYASKVDMHHLKEFLSGRQKDVPQETIQILDIVLRASPSEKYVTVGRSFFSLDLGKK GELGNGIEYWRGYYQSLRPTQMGLSLNIDVSARSFYEPILVTEFVAKYFNLRDLSRPLSDQDRVKVKRALRGIKVEISYRDYARSFKVTGISNLPVDKTM FTLDDKKTKVSVHQYFWDRYNIGLKYTSLPPLQAGTDAKPIYLPMELCKIAGGQRYTKKLNERQVTALLRATCQRPSARENSIKEMVAHNDYSRNVLVRN EFGIQVKEELTSVDARVLPPPMLKYHDTGREARVDPHLGQWNMINKKMVNGGKIDFWTCVNFSTRVQRDLPFEFCWQLMDMCNSKGMEFHPDPIIQIHSA DSRHIEKALHDVHKKCTAKLANQKGKQLQLLIIILPDFSGSYGKIKRICETELGIVSQCCQPQQAKKLSKQYLENVALKINVKAGGRNTVLNDAIQRRIP NVTDLPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHREEIIQDLYKKYQDPQKGLVHSGMIRELFIAFRRSTGQKPHRIIFYRDG VSEGQFSQVLLHEMQAIREACGTLEEGYCPPVTFVVVQKRHHTRFFPADHSKRDLTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVL FDENNFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSDSGSTGATGRSVEARSLPVVKENVKDVMFYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Potri.001G213700 [exp]	0	1
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.002G261800 [exp]	1.73	0.8474
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	12.24	0.8216
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.014G037900 [exp]	18.13	0.7866	Pt-CYP82.16
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040700 [exp]	20.85	0.7956
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.019G099900 [exp]	26.45	0.7565
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.018G090600 [exp]	34.58	0.7988
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	38.78	0.7862
AT1G05760		RTM1	restricted tev movement 1, Man...		Potri.010G144900 [exp]	39.57	0.7555	Pt-RTM1.1
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Potri.005G134200 [exp]	41.29	0.7814
AT5G04500			glycosyltransferase family pro...		Potri.008G028900 [exp]	42.70	0.7679

Compare expression of checked genes

Potri.001G213700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.