Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RHF2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 384 / 2e-132 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 117 / 2e-29 RHF1A RING-H2 group F1A (.1) AT4G00335 61 / 6e-11 RHB1A RING-H2 finger B1A (.1.2.3) AT5G15790 60 / 4e-10 RING/U-box superfamily protein (.1.2) AT3G02290 59 / 9e-10 RING/U-box superfamily protein (.1.2) AT5G41350 58 / 1e-09 RING/U-box superfamily protein (.1) AT4G23450 56 / 2e-09 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G38895 57 / 5e-09 RING/U-box superfamily protein (.1.2.3) AT3G58720 56 / 1e-08 RING/U-box superfamily protein (.1.2) AT1G18780 53 / 1e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066400 [exp] 392 / 4e-135 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.006G200200 [exp] 385 / 2e-132 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.008G149300 [exp] 166 / 3e-47 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 112 / 2e-27 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.014G087000 [exp] 63 / 4e-11 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.001G101700 [exp] 61 / 2e-10 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.017G100100 [exp] 60 / 6e-10 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.010G140300 [exp] 59 / 6e-10 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.003G161600 [exp] 59 / 1e-09 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013374 [exp] 370 / 4e-126 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 365 / 2e-124 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10013606 [exp] 340 / 2e-115 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 338 / 3e-114 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 243 / 6e-78 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 239 / 2e-76 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 116 / 8e-29 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 108 / 5e-26 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10024635 [exp] 65 / 5e-12 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10017788 [exp] 65 / 5e-12 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G213800.7 pacid=42793506 polypeptide=Potri.001G213800.7.p locus=Potri.001G213800 ID=Potri.001G213800.7.v4.1 annot-version=v4.1 ATGGAGGGAATTGAAGAGAGGAAGAAGAAGAGTGAAGCACATTTAACAGTATCTGCTGCAGCTTTCGTCGAAGGAGGGATACAGGAAGCGTGTGATGATG CTTGCAGTATTTGCCTGGAAAACTTCTGCGACAGTGATCCCTCAACTGTGACCAGTTGCAAGCATGAGTTCCACCTCCAGTGCATTCTTGAATGGTGTCA AAGGAGTTCCCAGTGCCCTATGTGTTGGCAACCCATCAGTTTGAAGGATCCCATGAGTCAGGAATTACTTGAGGCTGTAGAACAGGAGAGGAGTTTTAGG TTAAATCCATCAAGAAATGCCACCATATTTCATCATCCAGCCCTTGGGGACTTTGAATTACAGCATTTGCCAGTGGGTGCAAATGATGCTGAACTTGAAG AGCGTTTAATACAGCACTTAACTGCTGCTGCGGCAATGGGGCGGCGTCGTATTGCTAGAAGGGAAGGGCAGCGGAACAGGTCATCAGCTCAAGGTCGTCC ACAGTTCCTAGTACTCTCAAGTCAACCTAATGGATCCCCTGCTGGTTCAATTTCTTCCTCCCCAACTCAGAGAGAAGGTGAACCTGTTTCTGCAATCACA ATAGCAACACCATCTTCCCAACCACTTGAATCTTCTCTACAACTAATCACACCACTGTCTTCTGAAGCCCTGGCTGATCCATGTTCTGCTTCAGCTTCTG GATCCAGTTTTACCAATCAACATGCAAATTCCATGGACAATAGGTCTCCTAATCAGTCTTCTCCAAATAGTCAAGACAGAGCAGGGCCGTCAGACCTTCA GTCATTTTCAGAGTCTATCAAATCCAAATTCAATGCAGTGTCAATGAGATATAAAGAGTCGATTTCAAAGAGTACTAGGGGATGGAAAGAGAGATTTTTC ACTCGCAATACTACCATGGCAGATCTAGGTTCTGAAGTTAGAAGAGAGGTCAATGCTGGAATTGCGACAGTATCTCGCATGATGGAGAGTCTAGAAACCA GAGACGATAGTAGAACTGGCACCTCTTCTGTATCAAACAGTGTAGACGGTTCAGTTGCAGAATCTAACAGTCAGCAACCGGAGGTTGGTGTTGTCAATGC AACAAGTGATCCCAATACTAAAGTGCAAGCTTCACATGCTGCAAGTTCTGGCTCAGTTTAA
AA sequence Show only first row Show all	>Potri.001G213800.7 pacid=42793506 polypeptide=Potri.001G213800.7.p locus=Potri.001G213800 ID=Potri.001G213800.7.v4.1 annot-version=v4.1 MEGIEERKKKSEAHLTVSAAAFVEGGIQEACDDACSICLENFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPMSQELLEAVEQERSFR LNPSRNATIFHHPALGDFELQHLPVGANDAELEERLIQHLTAAAAMGRRRIARREGQRNRSSAQGRPQFLVLSSQPNGSPAGSISSSPTQREGEPVSAIT IATPSSQPLESSLQLITPLSSEALADPCSASASGSSFTNQHANSMDNRSPNQSSPNSQDRAGPSDLQSFSESIKSKFNAVSMRYKESISKSTRGWKERFF TRNTTMADLGSEVRREVNAGIATVSRMMESLETRDDSRTGTSSVSNSVDGSVAESNSQQPEVGVVNATSDPNTKVQASHAASSGSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.001G213800 [exp]	0	1	RHF2.3
AT5G41580			RING/U-box superfamily protein...		Potri.003G133000 [exp]	1.00	0.9217
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	3.46	0.8981
AT3G14470			NB-ARC domain-containing disea...		Potri.011G005900 [exp]	4.00	0.8863
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	4.47	0.8922
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.011G078300 [exp]	4.47	0.8946
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	4.69	0.9009
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	8.48	0.8896
AT1G36990			unknown protein		Potri.002G089100 [exp]	11.31	0.8683
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.003G194600 [exp]	12.24	0.8347
AT3G62010			unknown protein		Potri.002G184400 [exp]	12.96	0.8703

Compare expression of checked genes

Potri.001G213800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.