Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08470 629 / 0 SSL3 strictosidine synthase-like 3 (.1) AT5G22020 583 / 0 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 365 / 9e-125 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G59530 318 / 7e-106 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57010 304 / 8e-101 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 291 / 4e-96 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41300 281 / 9e-92 SSL1 strictosidine synthase-like 1 (.1) AT2G41290 260 / 6e-84 SSL2 strictosidine synthase-like 2 (.1) AT1G74000 184 / 6e-55 SS3 strictosidine synthase 3 (.1) AT1G74010 178 / 1e-52 Calcium-dependent phosphotriesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G037900 [exp] 360 / 9e-123 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G040900 [exp] 328 / 3e-110 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037700 [exp] 323 / 8e-108 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.007G130700 [exp] 320 / 8e-107 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 317 / 1e-105 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.T015518 [exp] 256 / 3e-82 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.008G109966 [exp] 256 / 3e-82 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.012G046200 [exp] 178 / 6e-53 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.015G037700 [exp] 175 / 2e-51 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008451 [exp] 637 / 0 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10013370 [exp] 546 / 0 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10008151 [exp] 300 / 2e-98 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 294 / 2e-96 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10012095 [exp] 225 / 2e-70 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10006331 [exp] 203 / 4e-62 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009646 [exp] 201 / 7e-60 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10034411 [exp] 191 / 5e-58 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009014 [exp] 199 / 2e-57 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10006330 [exp] 184 / 1e-54 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF08450 [poplar] [flax] SGL SMP-30/Gluconolactonase/LRE-like region
Representative CDS sequence Show only first row Show all	>Potri.001G214500.1 pacid=42788616 polypeptide=Potri.001G214500.1.p locus=Potri.001G214500 ID=Potri.001G214500.1.v4.1 annot-version=v4.1 ATGACGCCAACCGGAATTCTTGCTGGACTCTTTCTCCTTCTAACTCTGTACTGTGGCATAGACCCATGGAAGCAGAGTGCAATCTCAGGATTCCCAGACT TCAAGTCATACAAAGTTGAAATGCCTCCTTGGTCAATACTCCCCAAAGAGAAGGATGAAGAAAACTTACTCCAAAGATCAGAAATCAAGTTCTTGAATCA AATTCAAGGCCCTGAAAGCATGGCTTTTGACCCTCTTGGTCGTGGTCCTTACACTGGTGTTGCCGACGGTAGAATTCTCTTTTATGATGGCCAAAAATGG ACTGATTTTGCTTACACTTCAAGCAATAGATCAGAAATATGTAATCCTCAACCGTCGCCTTTGAGTTATTTGAAGAATGAGCACATTTGTGGCAGACCTT TGGGGCTCCGATTTGACAAGAAAACTGGTGATTTATACATAGCAGATGCATATTTTGGGCTGATGAAAGTGGGGCCAGAAGGTGGGTTAGCAACATCACT TTCAAATGAGGCAGAAGGGATCCCTCTGCGGTTTACCAATGATCTAGACATTGATGATGAAGGAAACATTTACTTCACAGATAGCAGTACAACATATCAG AGGAGGAACTTCATGCAGTTGGTTTTCTCTGGGGAGAACAGTGGGAGGGTTCTAAAGTACAATCCAACTACCAAAGAAACCACTGTCCTTGTGAGGAATC TTCAATTTCCAAATGGTGTGTCCCTAAGCAAGGATGGGTCCTTCTTCGTGTTCTGTGAAGGATCCATAGGCAGATTACGCAAGTACTGGCTGAAAGGTGA GAAAGCGGGAACTTCAGAAGTTTTAGCCATCATACCTGGATTTCCTGACAATGTCAGAACAAATGAAGAAGGTAACTTTTGGGTAGCAATCCATTGTCGT CGGAGCTTTTACACTCACATAAACGCACAATACCCAAATCTAAGGACATTCCTGCTTAAGCTCCCAATTCCAATGAAGATTCAATACCTGCTTCAAATAG GGGGCTGGCCCCATGGTCTAGTTGTCAAATACAGCCCAGAAGGTAAGCTCTTGCAGATATTGGAGGACAGTCAGGGAAAGGTTGTTAAAGCAATCAGTGA AGTGGAAGAGAAAGATGGGAAACTGTGGATGGGGAGTGTTTTGATGCCTTTTGTCGGAGTTTACAACTTGGCTTGA
AA sequence Show only first row Show all	>Potri.001G214500.1 pacid=42788616 polypeptide=Potri.001G214500.1.p locus=Potri.001G214500 ID=Potri.001G214500.1.v4.1 annot-version=v4.1 MTPTGILAGLFLLLTLYCGIDPWKQSAISGFPDFKSYKVEMPPWSILPKEKDEENLLQRSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFYDGQKW TDFAYTSSNRSEICNPQPSPLSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLSNEAEGIPLRFTNDLDIDDEGNIYFTDSSTTYQ RRNFMQLVFSGENSGRVLKYNPTTKETTVLVRNLQFPNGVSLSKDGSFFVFCEGSIGRLRKYWLKGEKAGTSEVLAIIPGFPDNVRTNEEGNFWVAIHCR RSFYTHINAQYPNLRTFLLKLPIPMKIQYLLQIGGWPHGLVVKYSPEGKLLQILEDSQGKVVKAISEVEEKDGKLWMGSVLMPFVGVYNLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Potri.001G214500 [exp]	0	1
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074700 [exp]	2.64	0.8210
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.010G176000 [exp]	11.74	0.7496	IDH1.2
AT1G07300			josephin protein-related (.1)		Potri.001G249500 [exp]	12.72	0.8134
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Potri.010G207800 [exp]	13.26	0.7728
AT4G34215			Domain of unknown function (DU...		Potri.009G096400 [exp]	16.09	0.7733
AT4G00770			unknown protein		Potri.002G152700 [exp]	19.44	0.7513
AT5G05270			Chalcone-flavanone isomerase f...		Potri.019G057800 [exp]	28.91	0.7500
AT4G24380			unknown protein		Potri.006G027000 [exp]	29.44	0.8006
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Potri.010G178800 [exp]	33.16	0.7833
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.001G457000 [exp]	33.46	0.7827	Pt-HMGR3.1

Compare expression of checked genes

Potri.001G214500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.