Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08465 183 / 9e-59 YABBY YAB2 YABBY2, Plant-specific transcription factor YABBY family protein (.1) AT2G26580 167 / 6e-53 YABBY YAB5 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) AT2G45190 138 / 1e-40 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) AT4G00180 129 / 3e-37 YABBY YAB3 YABBY3, Plant-specific transcription factor YABBY family protein (.1.2) AT1G23420 106 / 3e-28 YABBY INO, YAB4 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) AT1G69180 95 / 2e-24 YABBY CRC CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G000100 [exp] 242 / 2e-82 AT1G08465 215 / 3e-72 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.006G067800 [exp] 175 / 9e-56 AT2G26580 253 / 5e-87 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.018G129800 [exp] 166 / 3e-52 AT2G26580 250 / 5e-86 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.001G120200 [exp] 147 / 2e-44 AT2G45190 236 / 4e-79 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.003G112800 [exp] 144 / 4e-43 AT2G45190 243 / 1e-81 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.014G066700 [exp] 138 / 5e-41 AT2G45190 277 / 3e-95 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.016G067300 [exp] 132 / 3e-39 AT1G08465 150 / 2e-46 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.002G145100 [exp] 132 / 2e-38 AT2G45190 265 / 2e-90 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.010G042400 [exp] 113 / 4e-31 AT1G23420 191 / 3e-61 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019407 [exp] 137 / 1e-40 AT2G26580 228 / 8e-77 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10024603 [exp] 136 / 9e-40 AT2G45190 190 / 2e-60 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10032240 [exp] 133 / 1e-38 AT2G45190 193 / 1e-61 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10010361 [exp] 115 / 2e-31 AT2G45190 171 / 4e-53 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10036496 [exp] 108 / 2e-29 AT2G45190 183 / 2e-58 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10013028 [exp] 103 / 2e-27 AT1G23420 193 / 4e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10029135 [exp] 103 / 4e-27 AT1G23420 200 / 9e-65 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10030105 [exp] 104 / 7e-27 AT2G26580 172 / 3e-53 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10030596 [exp] 102 / 3e-26 AT1G23420 194 / 8e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10036811 [exp] 97 / 4e-25 AT1G69180 187 / 4e-61 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF09011 [poplar] [flax] HMG_box_2 HMG-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G214700.8 pacid=42788528 polypeptide=Potri.001G214700.8.p locus=Potri.001G214700 ID=Potri.001G214700.8.v4.1 annot-version=v4.1 ATGCTTGCTAGGGTTCTGTTAAAATTTGAAGCAAATTATACATTTGGATCTATCCAAGTGATTTCTTGTGACAATACAAGGCGCGCATTCCTTTCATGTT TCACAAATTCTTCATGGCAGGTTAGTGTTCCAAGCAGCAGTTTGTTCAATATTGTGACAGTAAGATGCGGGCATTGTGGCAATTTGCTGTCTGTGAACAT GGGAGCATCCTTACAAACACTTCCTCTTCAAGATCCCCAATCACAGAAACTGCTCCTTATTAACTCAGAAGATTTGAACAAGAACTTTGGTTCATCTTCC AAATGTAACAAGGTCACTGCTTCAGAGTCTACTGAGCATGAACCGCCTAGGATGCCCGCCATCCGCCCCCCAGAGAAGAGGCAGCGTGTTCCTTCTGCAT ATAATCGGTTCATCAAGGAGGAAATTCAAAGGATCAAGGCTAGCAATCCTGACATTAGCCACAGGGAAGCTTTCAGCACAGCAGCCAAAAATTGGGCACA TTTTCCTCACATTCACTTTGGACTGAAGCTGGACAGCAACAAGCACGCTAAATTAGACCACCAGTCATTTGCAGGAGAGGGCACCCAAAAAACTAGTGGA TTGTACGAGATCAATGGCTCCCTGTGA
AA sequence Show only first row Show all	>Potri.001G214700.8 pacid=42788528 polypeptide=Potri.001G214700.8.p locus=Potri.001G214700 ID=Potri.001G214700.8.v4.1 annot-version=v4.1 MLARVLLKFEANYTFGSIQVISCDNTRRAFLSCFTNSSWQVSVPSSSLFNIVTVRCGHCGNLLSVNMGASLQTLPLQDPQSQKLLLINSEDLNKNFGSSS KCNKVTASESTEHEPPRMPAIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDSNKHAKLDHQSFAGEGTQKTSG LYEINGSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.001G214700 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Potri.015G117300 [exp]	1.41	0.9600
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162500 [exp]	2.00	0.9557
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	8.83	0.9532
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007600 [exp]	13.67	0.9369
AT1G78995			unknown protein		Potri.007G003600 [exp]	13.85	0.9516
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.009G113600 [exp]	14.14	0.9041	Pt-SORT2.2,PtrPLT
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G109000 [exp]	14.42	0.9346
AT1G18810			phytochrome kinase substrate-r...		Potri.015G062600 [exp]	16.70	0.9392
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Potri.001G331600 [exp]	18.97	0.9462	GHS1.1
AT1G49975			unknown protein		Potri.001G292000 [exp]	19.10	0.9489

Compare expression of checked genes

Potri.001G214700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.