Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22030 1085 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G40930 690 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10570 652 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 644 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 612 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT5G46740 99 / 5e-21 UBP21 ubiquitin-specific protease 21 (.1) AT4G31670 87 / 2e-17 UBP18 ubiquitin-specific protease 18 (.1) AT5G10790 86 / 4e-17 UBP22 ubiquitin-specific protease 22 (.1) AT4G24560 86 / 1e-16 UBP16 ubiquitin-specific protease 16 (.1) AT4G17895 83 / 4e-16 UBP20 ubiquitin-specific protease 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201100 [exp] 905 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G033800 [exp] 701 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 694 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G449000 [exp] 644 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 637 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.016G067400 [exp] 229 / 4e-67 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.006G266100 [exp] 90 / 3e-18 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.003G092400 [exp] 88 / 1e-17 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G142000 [exp] 87 / 2e-17 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013369 [exp] 1189 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 1151 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 817 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 802 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10027289 [exp] 683 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 640 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10017343 [exp] 634 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 632 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 611 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 409 / 4e-129 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G214800.2 pacid=42793586 polypeptide=Potri.001G214800.2.p locus=Potri.001G214800 ID=Potri.001G214800.2.v4.1 annot-version=v4.1 ATGGAGAACGGTCTCTCTGAAGATCTCTCCGATTCAACTCAGTTACCCGAATCAGACAACGACCAGCGAGTCTACTTTGTTCCTTACAGGTGGTGGAAGG ATGCACAAGATGCAACGACGTCGGATGAATCAGATGGGAATAGAGGGGTTCTGTTTATGGCAACTCCACCTTCATCGTATGCAGGTCCTATGAAGCTTAT AAATAGCATCTTCAATCCAGAACTTGCGTTTAATTTGAGGAGAGAAGAGAATTCTTTGCAGAATGGTGAAAGTGGTGAAGTGGGTATCTCCGGGCGGGAT TTTGCATTGGTTTCTGGAGAAATGTGGTTGCAGGCACTTAAATGGCACAGTGACACTAAAGTTGCAGCAAAGTGTGGAAAAACCTTTTCTGCTGCAGAAG ATGACATGTCAGATGTCTACCCTTTACAACTCAGGCTTTCTGTATTGCGAGAGACAAATTCATTAGGAGTAAAAGTTATCAAAAAGGACAATGTAACTGA GCTGTTCAGAAGAGCCTGCAAGATTTTCAGTCTTGATTCTGAGATGCTTCGCATCTGGGACTTTTCGGGGCAGACGGCTCTTTTTTTCATAAATGACAAA ACTAAGTTCCCGAAGGACTGTCAGCAGCAGTCTGATCAGGAGCTTCTCCTGGAGTTGCAAATTTATGGATTATCTGATAGCATTAAGTGCAGAGAAGGGA AGAAAGCTGATATGGCTGTACAAAATTATAACGGAATACATTCTTCTGGAACTTCAACTGCTATGAATGGAAATGCTGGCAATACAAGCACCAGTATTTT CCGCAGCAATTCTTCAGCGTTTTTCGGCAGATCTGGAGAAGCTGGTTCCTTGGGATTGACAGGATTACAGAATCTTGGAAATACTTGCTTCATGAATAGT GCCATTCAGTGCTTAGCACACACACCAAAGCTTGTAGACTATTTTCTTGGAGATTATGGTAGAGAAGTAAACCACAAGAACCCTTTGGGGATGAATGGCG AGATTGCCTTAGCTTTCGGGGATTTGTTAAGGAGATTGTGGGCTCCTGGAGCAACTCCCGTGGCTCCAAGAACATTCAAGTCAAAGCTTGCTCGTTTTGC TCCTCAATTCAGTGGCTTTAATCAGCATGATTCTCAGGAACTCCTTGCTTTTTTGTTGGATGGGCTCCATGAGGATCTGAATCGTGTGAAATCCAAACCT TATGTAGAAGCCAAAGATGAGGAGAGTCGGCCAGATGAAGAAGTAGCTGATGAATATTGGCAGAATCATGTGGCTCGCAATGACTCTGTTATTGTCGATG TTTGCCAGGGTCAATATAAATCAACTCTAGTTTGTCCTGATTGCAGAAAGGTTTCTGTTACATTTGATCCATTTATGTACCTATCACTACCTCTACCATC AACAAATACCCGGACTATGACTTTGACAGTTGTTAGTGCCGATGGCAGTATTCAACCATCTTCATATACCATTTCTGTGCCGAAGTTTGGAAAATGTGAA GATCTTATCCAGGCTCTAAGCATTGCATGTTCTTTAGGGATTGATGAGACCCTATTGGTGGCGGAGGTATACAACAATCGCATTATACGATTTCTAGAGG AGCCAGCAGATTATTTGTCCTTAATCAGGGATAATGACCGCTTGGTTGCTTATCGGTTAAAAAAAGATTTTGACAATTCTCCCTTGGTTGTTTTTATGCA TCAGCACATGGAGGAGCATTACTTCCATGGGAAACTTACTTCAAGTTGGAAGGCATTTGGAATCCCTCTAGTAGGGAATGTCCACAATTTTGTCAGTGGG TCTGACATTCATAATCTATATCTGCAATTGGTTGCTCCATTTCGGATACCTCCTGATGGTACCTTGGATAATGACTTGGACAGCACTACAATTGAAGAAG TGGAAGGGATGGTGGATAACACCAGTTCCTCTCCTGATGGGGATGCAAAACCCTGTAGTGCAAAAGGGGTTGAGTTACCATCAGATTCTGAACTACAGTT TTATTTAACAGATGAGAAGGGAATGGTCAAGGATGAAAATATAGTAATGAATGAGCCTGTACCGAAGATAGGATTACACAGGCGGTTTAACGTGCTTGTT TGTTGGCCAGAAAAACTGACTAAACAGTATGACACAAGCCTTCTTAGCTCATTACCTGAGATTTTCAAGTCTGGATTTTTTGCAAAGAGACCTCAGGAAT CTGTTTCTCTATACAACTGCCTAGAAGCATTTTTAAAGGAGGAACCTCTTGGACCAGAAGACATGTGGTACTGTCCAAGTTGCAAGCAGCATCGTCAAGC CAGTAAAAAATTAGATCTCTGGAGACTGCCAGAGATTCTGGTTATTCATTTAAAGAGATTCTCGTATACGCATTCTGCAAAGAACAAGCTAGAGACATAT GTTGACTTCCCTGTTGATGATCTCGATTTGTCAACGCATCTTTCCTACAAGAATGGTCAGTTATCCCATCGTTACATGCTTTATGCTATCAGTAATCACT ATGGAAGCATGGGAGGCGGTCACTACACAGCATTTATCCATTATGGGGGTGATCAGTGGTATGACTTTGACGATAGTCATGTTTCCCCAATCAGCCAGGA GAAGATAAAGACTTCTGCTGCATATGTTCTTTTCTACAGAAGAGTTTTGAAGTAG
AA sequence Show only first row Show all	>Potri.001G214800.2 pacid=42793586 polypeptide=Potri.001G214800.2.p locus=Potri.001G214800 ID=Potri.001G214800.2.v4.1 annot-version=v4.1 MENGLSEDLSDSTQLPESDNDQRVYFVPYRWWKDAQDATTSDESDGNRGVLFMATPPSSYAGPMKLINSIFNPELAFNLRREENSLQNGESGEVGISGRD FALVSGEMWLQALKWHSDTKVAAKCGKTFSAAEDDMSDVYPLQLRLSVLRETNSLGVKVIKKDNVTELFRRACKIFSLDSEMLRIWDFSGQTALFFINDK TKFPKDCQQQSDQELLLELQIYGLSDSIKCREGKKADMAVQNYNGIHSSGTSTAMNGNAGNTSTSIFRSNSSAFFGRSGEAGSLGLTGLQNLGNTCFMNS AIQCLAHTPKLVDYFLGDYGREVNHKNPLGMNGEIALAFGDLLRRLWAPGATPVAPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKSKP YVEAKDEESRPDEEVADEYWQNHVARNDSVIVDVCQGQYKSTLVCPDCRKVSVTFDPFMYLSLPLPSTNTRTMTLTVVSADGSIQPSSYTISVPKFGKCE DLIQALSIACSLGIDETLLVAEVYNNRIIRFLEEPADYLSLIRDNDRLVAYRLKKDFDNSPLVVFMHQHMEEHYFHGKLTSSWKAFGIPLVGNVHNFVSG SDIHNLYLQLVAPFRIPPDGTLDNDLDSTTIEEVEGMVDNTSSSPDGDAKPCSAKGVELPSDSELQFYLTDEKGMVKDENIVMNEPVPKIGLHRRFNVLV CWPEKLTKQYDTSLLSSLPEIFKSGFFAKRPQESVSLYNCLEAFLKEEPLGPEDMWYCPSCKQHRQASKKLDLWRLPEILVIHLKRFSYTHSAKNKLETY VDFPVDDLDLSTHLSYKNGQLSHRYMLYAISNHYGSMGGGHYTAFIHYGGDQWYDFDDSHVSPISQEKIKTSAAYVLFYRRVLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	0	1
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	2.00	0.9333
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	4.89	0.9145
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	6.32	0.9033
AT4G32120			Galactosyltransferase family p...		Potri.018G024500 [exp]	7.93	0.9010
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.011G042400 [exp]	8.36	0.8590	FBL6
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	9.79	0.9022
AT3G27325			hydrolases, acting on ester bo...		Potri.001G338000 [exp]	11.35	0.9036
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	12.00	0.9035	Pt-CLF.1
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	13.00	0.8921
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	13.22	0.8746

Compare expression of checked genes

Potri.001G214800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.