Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55690 95 / 3e-22 MADS MADS-box transcription factor family protein (.1) AT5G58890 87 / 3e-19 MADS AGL82 AGAMOUS-like 82 (.1) AT3G05860 71 / 2e-14 MADS MADS-box transcription factor family protein (.1.2.3) AT3G18650 69 / 5e-13 MADS AGL103 AGAMOUS-like 103 (.1) AT1G65300 66 / 3e-12 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT1G22590 61 / 3e-11 MADS AGL87 AGAMOUS-like 87 (.1.2) AT1G65330 62 / 7e-11 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT2G28700 60 / 7e-10 MADS AGL46 AGAMOUS-like 46 (.1) AT2G22630 58 / 1e-09 MADS AGL17 AGAMOUS-like 17 (.1) AT5G27960 59 / 2e-09 MADS AGL90 AGAMOUS-like 90 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109900 [exp] 166 / 7e-48 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.002G255700 [exp] 164 / 3e-47 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 159 / 7e-46 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.005G002400 [exp] 72 / 4e-14 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.015G077800 [exp] 66 / 3e-12 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1) Potri.004G222200 [exp] 64 / 2e-11 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.013G107600 [exp] 60 / 1e-10 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.007G113800 [exp] 60 / 3e-10 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.006G201700 [exp] 61 / 4e-10 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007371 [exp] 121 / 1e-31 AT5G55690 100 / 1e-24 MADS-box transcription factor family protein (.1) Lus10014095 [exp] 121 / 3e-31 AT5G55690 87 / 3e-19 MADS-box transcription factor family protein (.1) Lus10019819 [exp] 120 / 6e-31 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1) Lus10020789 [exp] 117 / 7e-30 AT5G58890 91 / 9e-21 AGAMOUS-like 82 (.1) Lus10022325 [exp] 66 / 4e-12 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10041548 [exp] 59 / 3e-11 AT3G61120 92 / 6e-25 AGAMOUS-like 13 (.1) Lus10012545 [exp] 59 / 3e-11 AT3G61120 92 / 1e-24 AGAMOUS-like 13 (.1) Lus10022316 [exp] 61 / 2e-10 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 61 / 3e-10 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10042918 [exp] 56 / 1e-09 AT3G57230 117 / 5e-34 AGAMOUS-like 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.001G214900.1 pacid=42790806 polypeptide=Potri.001G214900.1.p locus=Potri.001G214900 ID=Potri.001G214900.1.v4.1 annot-version=v4.1 ATGGGTCGTGGTAAGCTAACCATGGAACTCATACGCAATGAGAGATCTCGGATGATTACTTATCACAAAAGAAAGAAGGGTTTGACAAAGAAAGCTAGGG AATTCCAAATTCTCTGTGGTGTAGATGCATGTGTTATCATTTTGGGGCCAAAACTGAATAATCATCCTGTTGATGTCGAAACCTGGCCAACCGATCGCAT TGAGGTCAGACGCATTATCAACAGGTTTAGGTCGGAAGGTACAGACCGAAAGAAAACACAAGATTTGTCTTATTTTTTTGAAGCTCGGAAGAAGAAACTG GATGATGAAATTGCTAAACTGCGCAAAGCCTGTATGGAAGCAAAGTTCCCTGCATGGGATAATCGTCTCAACTTGTTATCACTCGAGCAACTCAGGGTAC TTGCAGGAGTTTTCGAATCTAAACTTGATGTTGCAAGAGGTTGGATAATGAAGCTAAAAGGCAACCCCTTTTTGATGGAAGATTCCAAGTCAGGGATTAA TGCAGCTGGCTCCATTAGTGATAAATCAAGCTTTCTGGCTTCGAGTACTCTTGCTAATGCCTTACTTCCGAAGAATATTGAATTAGAGGCTCTAAACCAC CAACCCTTTTCTTGTGCCAAACCAATAGATATGCCACTGGCTACATGCTACCCATCTCATCAGCTGCAACAGATGCTTCCATTCAATGTCAATCCTATCA ATAGTCCCATGTTGATGATGATGAACCATGAAGATTTCGGTCAGTTTGGCGGCCTTTCTAGTAGTAGCACCATAAAATCCACAGTTCAATACAATTATGA TCCAGCCACAGAGATGATAGGGAACATGATGTTCAACAATCCCGGCTGGGAACTCTCAGCAAGCTATCATGGTCCAAGCAGGCAACCGATTTTTCCCTAC CGGCAGGGTCCAATGACGCAGAATGTTTCTTCTCAACTGTGCATCCCTCAGTTCTCTTATTTTTTTGATGTCAACGAGCTTGAGATGAACAGAACAGAAA ACTTCGGATGA
AA sequence Show only first row Show all	>Potri.001G214900.1 pacid=42790806 polypeptide=Potri.001G214900.1.p locus=Potri.001G214900 ID=Potri.001G214900.1.v4.1 annot-version=v4.1 MGRGKLTMELIRNERSRMITYHKRKKGLTKKAREFQILCGVDACVIILGPKLNNHPVDVETWPTDRIEVRRIINRFRSEGTDRKKTQDLSYFFEARKKKL DDEIAKLRKACMEAKFPAWDNRLNLLSLEQLRVLAGVFESKLDVARGWIMKLKGNPFLMEDSKSGINAAGSISDKSSFLASSTLANALLPKNIELEALNH QPFSCAKPIDMPLATCYPSHQLQQMLPFNVNPINSPMLMMMNHEDFGQFGGLSSSSTIKSTVQYNYDPATEMIGNMMFNNPGWELSASYHGPSRQPIFPY RQGPMTQNVSSQLCIPQFSYFFDVNELEMNRTENFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G214900 [exp]	0	1
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	3.00	0.6736
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	5.83	0.6757
					Potri.006G047250 [exp]	12.72	0.6089
AT4G27745			Yippee family putative zinc-bi...		Potri.003G145400 [exp]	14.14	0.5068
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	15.49	0.5414
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.007G073000 [exp]	20.85	0.5313
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	23.06	0.5340
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222401 [exp]	26.87	0.4644
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.003G224100 [exp]	28.39	0.5006
					Potri.010G084600 [exp]	28.61	0.5665

Compare expression of checked genes

Potri.001G214900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.