Plant FIBer expression Database

Potri.001G215132 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44110 166 / 9e-51 ATJ3 DNAJ homologue 3 (.1.2)
AT5G22060 161 / 7e-48 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1)
AT3G62600 49 / 4e-07 ATERDJ3B DNAJ heat shock family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G015700
[exp]
191 / 2e-59 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2)
Potri.008G018800
[exp]
177 / 3e-54 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
Potri.010G243100
[exp]
174 / 6e-53 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
Potri.002G141100
[exp]
142 / 9e-41 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2)
Potri.014G055300
[exp]
85 / 6e-20 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2)
Potri.002G198000
[exp]
49 / 7e-07 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1)
Potri.014G122600
[exp]
48 / 1e-06 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004109
[exp]
181 / 1e-55 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1)
Lus10042891
[exp]
132 / 5e-37 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1)
Lus10028188
[exp]
128 / 2e-35 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1)
Lus10003651
[exp]
50 / 2e-07 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1)
Lus10022297
[exp]
50 / 3e-07 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1)
Lus10013364
[exp]
46 / 5e-06 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2)
Lus10014584
[exp]
43 / 8e-05 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1)
Lus10032100
[exp]
42 / 0.0001 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00684 DnaJ_CXXCXGXG DnaJ central domain
PF01556 DnaJ_C DnaJ C terminal domain
Representative CDS sequence
>Potri.001G215132.1 pacid=42790800 polypeptide=Potri.001G215132.1.p locus=Potri.001G215132 ID=Potri.001G215132.1.v4.1 annot-version=v4.1
ATGATCGCCATGGGGAAGAAACACTCAAGGACGGAATGGGTGCTGGCGGTGCTGCCCAAAACAACCCTTTTGACCCTTTTTAATCTTTCTTTGGTGGGAG
TAGCCGAGGGAGGAGGCAGAGACAACGGGGGAGAGGATGTGGTTCATTCATTGAAGGTGTCATTGGAGGATCTGTACCTTGGAACATCAAAGAAGCATTC
TCTAACCTGGAATGTGATTTGCTCCATGTGCAATGGAAAGGGATCGAAATCTGGAGGGTCGATCAAGTGCGGTGTCTGCCAAGGAAGTGGCATGAAGGTC
TCGATAAGGCAACTCGGGCCTTCAATGATTCAACAGATGCAGCGTCCTTGCAATGAATGCAAGGGATCGGGAGAGACCATAAGAGATAAGGATCGTTGCC
CACAGTGCAAGGGGGAGAAGGATGTTCCAGAGAACAAGGTTTTGGAAGTTATAGTGGAGAAAGGGATGCAGAATGGACAGAAGATTACCTTCCCTGGTGA
AGCTGACGAAGCGTTGTGTTGCATATCCACACTGTTAATTTTGACTGTGCTGTTATTTTGA
AA sequence
>Potri.001G215132.1 pacid=42790800 polypeptide=Potri.001G215132.1.p locus=Potri.001G215132 ID=Potri.001G215132.1.v4.1 annot-version=v4.1
MIAMGKKHSRTEWVLAVLPKTTLLTLFNLSLVGVAEGGGRDNGGEDVVHSLKVSLEDLYLGTSKKHSLTWNVICSMCNGKGSKSGGSIKCGVCQGSGMKV
SIRQLGPSMIQQMQRPCNECKGSGETIRDKDRCPQCKGEKDVPENKVLEVIVEKGMQNGQKITFPGEADEALCCISTLLILTVLLF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G44110 ATJ3 DNAJ homologue 3 (.1.2) Potri.001G215132
[exp]
0 1
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Potri.017G036400
[exp]
14.00 0.8734
AT2G13440 glucose-inhibited division fam... Potri.005G066300
[exp]
14.56 0.8908
AT3G42630 Pentatricopeptide repeat (PPR)... Potri.018G146900
[exp]
16.12 0.8867
AT3G56040 UGP3 UDP-glucose pyrophosphorylase ... Potri.010G185800
[exp]
26.32 0.8797
AT2G44930 Plant protein of unknown funct... Potri.012G012500
[exp]
35.09 0.8787
AT1G07250 UGT71C4 UDP-glucosyl transferase 71C4 ... Potri.006G010000
[exp]
39.24 0.8693
AT1G53310 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CAR... Potri.002G214100
[exp]
42.90 0.8204
AT4G17300 ATNS1, NS1, OVA... ovule abortion 8, Class II ami... Potri.017G028800
[exp]
79.32 0.8635 NS1.2
AT5G35170 adenylate kinase family protei... Potri.006G189201
[exp]
86.53 0.8494
AT1G06690 NAD(P)-linked oxidoreductase s... Potri.005G207100
[exp]
86.60 0.8612

Potri.001G215132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.