Plant FIBer expression Database

Potri.001G215166 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G074800
[exp]
57 / 5e-11 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1)
Potri.003G156400
[exp]
52 / 2e-09 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G215166.1 pacid=42791777 polypeptide=Potri.001G215166.1.p locus=Potri.001G215166 ID=Potri.001G215166.1.v4.1 annot-version=v4.1
ATGGCTTCTTCCCAGATCGAGATTGTTTCGTCTTCACCGTTTGTTTGTGGTTTAAGAGATCATAATCGGCATGAACAATGTAATAGAGAGAGCAAGAGAA
AGAAGGAGAGTCATGAGAAGCTGGAGGAAGGATTATCTACTCTGCTCGCAGATCTGAACCGCATATGCAGAGCATGGAATGACCTCTACATTTGTTGGTA
CTTCTACAAAGTTGTGGTGAAAAAGTACGAAAAATAA
AA sequence
>Potri.001G215166.1 pacid=42791777 polypeptide=Potri.001G215166.1.p locus=Potri.001G215166 ID=Potri.001G215166.1.v4.1 annot-version=v4.1
MASSQIEIVSSSPFVCGLRDHNRHEQCNRESKRKKESHEKLEEGLSTLLADLNRICRAWNDLYICWYFYKVVVKKYEK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G215166
[exp]
0 1
AT1G26650 unknown protein Potri.008G091500
[exp]
8.12 0.8067
AT4G22140 EBS EARLY BOLTING IN SHORT DAYS, P... Potri.002G226000
[exp]
11.40 0.8262
AT1G67623 F-box family protein (.1) Potri.001G321400
[exp]
12.24 0.7752
AT4G14420 HR-like lesion-inducing protei... Potri.002G040900
[exp]
15.16 0.7292
AT2G17030 F-box family protein with a do... Potri.001G277400
[exp]
15.87 0.7652
AT5G48660 B-cell receptor-associated pro... Potri.014G191500
[exp]
17.32 0.7857
AT1G79220 Mitochondrial transcription te... Potri.007G069100
[exp]
18.76 0.8167
AT1G47578 Biotin/lipoate A/B protein lig... Potri.002G131000
[exp]
22.95 0.7416
AT5G51880 2-oxoglutarate (2OG) and Fe(II... Potri.012G133100
[exp]
25.29 0.7222
AT4G26980 RNI-like superfamily protein (... Potri.011G090700
[exp]
30.74 0.7945

Potri.001G215166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.