Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22190 272 / 4e-87 IQD5 IQ-domain 5 (.1.2) AT2G26180 126 / 6e-32 IQD6 IQ-domain 6 (.1) AT1G72670 91 / 1e-19 IQD8 IQ-domain 8 (.1) AT5G03040 75 / 2e-14 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 74 / 5e-14 IQD1 IQ-domain 1 (.1.2) AT3G15050 72 / 5e-14 IQD10 IQ-domain 10 (.1) AT2G33990 67 / 2e-12 IQD9 IQ-domain 9 (.1) AT3G52290 67 / 9e-12 IQD3 IQ-domain 3 (.1) AT1G17480 63 / 1e-10 IQD7 IQ-domain 7 (.1) AT4G00820 57 / 1e-08 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015800 [exp] 520 / 0 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 127 / 3e-32 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.003G042700 [exp] 99 / 3e-22 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.018G062001 [exp] 92 / 3e-21 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.004G053000 [exp] 91 / 5e-20 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.010G218100 [exp] 85 / 2e-17 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 84 / 2e-17 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 84 / 4e-17 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.011G063200 [exp] 82 / 4e-17 AT2G33990 238 / 9e-78 IQ-domain 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013362 [exp] 316 / 6e-104 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10004107 [exp] 293 / 2e-94 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10013522 [exp] 118 / 7e-29 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10014870 [exp] 81 / 5e-16 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10015300 [exp] 74 / 2e-14 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10025425 [exp] 72 / 7e-14 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10036508 [exp] 71 / 6e-13 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 70 / 9e-13 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 68 / 5e-12 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 68 / 7e-12 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.001G215200.1 pacid=42789399 polypeptide=Potri.001G215200.1.p locus=Potri.001G215200 ID=Potri.001G215200.1.v4.1 annot-version=v4.1 ATGGGTGTCTCAGGGAAATGGTTTAAAGCATTGGTTGGTTTAAAGAAGTCTGAAAAGTCACAGTCTTTGGACAAGGATGAAAATAGGACGAGTGCCAGCA AGTTTCGGCATAGGAGGAAGCATTCGGTTGAGTTTGATGGTGATAAATTTGAAGAGGAGTTTGATAATCATGACAATGTAGCTACAGTTGGTGATACCAA CGTTGTTTCCGTTCCAGATGCGTCGGAATCTCCTTCTGCTTCACTTCAAGTTCAGGATGTTGCTCATAATCAACAAGTTCTGAGAGAAGAATGGGCTGCC ACTCGCATCCAGACAGCTTTTCGAGGGTTTTTGGCAAGAAGAGCTCTTCGAGCTTTGAAAGGATTAGTGAGACTGCAAGCCCTTGTTCGGGGCCATGCTG TGAGGAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTGGTGAGAGTTCAGGCTCGTGTCCGTGCAAGACGTGTTCGCTTAGCATTGGAGAGTCA AACAGCTCAACATAAACTTCAGCAACAACTAGCTAATGAGGCTCGCGTTCGAGAAATAGAGGAAGGATGGTGTGATAGTGTGGGATCTGTTGAACAAATT CAAGCCAAGTTGCTGAAGCGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTTTGGCCCATCAGTGGCAGGCTGGGTCGAGACTGCAGG CTGCTCCCTCTGGGTTTGAACCTGATAAAAGCAGTTGGGGCTGGAACTGGTTGGAGAGATGGATGGCTGTTCGCCCATGGGAAAACCGCTTTCTTGACAT AAATCTCAGAGATGGAGTGATGATTTATGAAGATGAAACAGCTGCTGAGGTCAAGAATGGCAGCAAATCCCAGCTAAAAACTACTACCAAGAAAGGAGTT GCCTCAAACCTTCAATCAACCATTTCAAGTCAGAAAACAGGTCCATCTCATTCTGATGGTGGCAGTTCCTCCCCTAGTAAGTCAGCAGGCATCTTTGATG TGCCCGACACTCTTTTTACTAAACCAAAGCCAAAGCTAGTTCTTGAAGACCTGGTTGAAGAAGCCAACTCAAGACGTGCTATTGTTACAAGATCTCACAG CAACCCAAAGGAGAGAACTACCCAACTAGATAAACAGGCAAGGAAGAGATTGTCTCTGCCTAACAGTGGGGGGGGTACTGGCGCTCAGGTAGCCAGGCAT AGCAGAAACGCTACTAGAGGGGCACCTAGCTCTCAGAAGCCCATCAAGGATAGATCCAAGTTAAACGGGAAAGGAGATCCAAACACCGCAAAGTCTGTTG CACAGGCTGTTTGA
AA sequence Show only first row Show all	>Potri.001G215200.1 pacid=42789399 polypeptide=Potri.001G215200.1.p locus=Potri.001G215200 ID=Potri.001G215200.1.v4.1 annot-version=v4.1 MGVSGKWFKALVGLKKSEKSQSLDKDENRTSASKFRHRRKHSVEFDGDKFEEEFDNHDNVATVGDTNVVSVPDASESPSASLQVQDVAHNQQVLREEWAA TRIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTAQHKLQQQLANEARVREIEEGWCDSVGSVEQI QAKLLKRQEAAAKRERAMAYALAHQWQAGSRLQAAPSGFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIYEDETAAEVKNGSKSQLKTTTKKGV ASNLQSTISSQKTGPSHSDGGSSSPSKSAGIFDVPDTLFTKPKPKLVLEDLVEEANSRRAIVTRSHSNPKERTTQLDKQARKRLSLPNSGGGTGAQVARH SRNATRGAPSSQKPIKDRSKLNGKGDPNTAKSVAQAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Potri.001G215200 [exp]	0	1
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.018G068600 [exp]	5.91	0.7785
AT3G08880			unknown protein		Potri.016G122350 [exp]	8.06	0.7221
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.013G041400 [exp]	8.36	0.7214
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	8.94	0.7700
AT4G15080			DHHC-type zinc finger family p...		Potri.006G020800 [exp]	10.95	0.7020
AT5G19670			Exostosin family protein (.1)		Potri.018G085400 [exp]	13.85	0.7421
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Potri.018G066300 [exp]	15.87	0.7289	SMH903
AT1G75060			unknown protein		Potri.014G041200 [exp]	20.19	0.7415
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	20.78	0.7186
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.008G137801 [exp]	23.06	0.7378

Compare expression of checked genes

Potri.001G215200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.