Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G52060 343 / 1e-116 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25330 273 / 7e-89 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G32290 239 / 3e-75 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 164 / 8e-47 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 155 / 2e-43 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 147 / 8e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 145 / 2e-39 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 143 / 8e-39 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 139 / 3e-37 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017300 [exp] 545 / 0 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G018600 [exp] 360 / 4e-123 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.010G242900 [exp] 352 / 6e-120 AT3G52060 407 / 9e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G254800 [exp] 161 / 1e-46 AT4G32290 210 / 1e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 147 / 2e-40 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 147 / 2e-40 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 147 / 3e-40 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 142 / 2e-38 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 142 / 3e-38 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004106 [exp] 456 / 9e-160 AT5G22070 486 / 3e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10008954 [exp] 341 / 3e-115 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10028866 [exp] 335 / 8e-113 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10002919 [exp] 250 / 7e-80 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001503 [exp] 249 / 2e-79 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013361 [exp] 179 / 2e-53 AT5G22070 212 / 6e-67 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 142 / 3e-38 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036774 [exp] 141 / 6e-38 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025464 [exp] 140 / 1e-37 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 139 / 3e-37 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G215400.2 pacid=42788455 polypeptide=Potri.001G215400.2.p locus=Potri.001G215400 ID=Potri.001G215400.2.v4.1 annot-version=v4.1 ATGCCAAACCAGCAAGAACACCCCAAATCTCAAAGAAACATCATCTCTCTCATGGCAGAAACATCATCAACAAATTCTATCAAAATTGGTACTAAAATGT TCTCAACCCAATTTGTAATCATTTTCTCTCTCTTTCTATCCCTTCCTATCCTTTTCCTTTTAGCCCCGAGAATCTTCCCTTCTCATAACCCCTCCATCCC TATCTCCCCTTCTGATGAACTTGACGACTTTGTTCTTTTCCGCAAAGCCATCGCCTCCGCATCCGCCTCCACCTCCGCCTCCGCCACCCGCTACCCCTCA GCCCATTCCCATCTCACCTCCAAATCTAAAAAACTCAAAATCGCCTTCCTTTTCTTGACCAACACAGATCTCTTCTTCGCCCCTTTATGGGAACAATTCT TCAAATCCGCTGACAAAAACCTCTTCAACATTTACGTCCACGCCGATCCCCACTCCAATGTTACAAAACCCACAGGGATTTTCTTCTCCCAATTCATTCC TGATGCCAAGCGCACTTATCGCGCCTCCCCCACCTTGATCTCCGCCACCCGACGCCTCCTCGCCAACGCCATCCTTGACGACCCCACCAATACCTTCTTC GCCGTCCTCTCCCAGTACTGCATCCCTCTCCATTCCTTCAAATACGTCTACAATTCGTTAATCAGTTCCAAGTCTTTCGATTTGTCTTCCCCCGAGTCAG ACCCCGAATCGACTAAGTACAATATGAAAATCCAGTACAAGAGTTTCATCGAGATTATATCGAAGGATCGGCGGTTATGGAAAAGATACGTGTCTAGAGG GAAGTATGCGATGATGCCAGAGGTGCCCTTCGAGAAATTCCGTGCTGGGTCTCAGTTTTTTGTTCTCACGCGCCGGCACGCGCTCATGGTGATTGAAGAT CGGAGGCTGTGGAATAAGTTCAAGCTGCCCTGTTATCGAGAAGATGAATGTTACCCAGAAGAACATTATTTCCCAACGTTGCTTTCAATGCAGGATCCAG ATGGTTGTACTAAGTATACGTTGACAAAGGTTAATTGGACTGGAACTAGGAATGGACATCCTTATACTTATAAGGCTGCTGAGATTTCTCCGGTTCTGAT TCAAGAGCTTAGGCAATCAAATTATTCGAGTTCGTATTTGTTTGCCAGGAAATTTGAGCCCATTTGTCTAAACCCTTTGATGAAAATTGCTGATAAAGTC ATTTTCCGGGACTAA
AA sequence Show only first row Show all	>Potri.001G215400.2 pacid=42788455 polypeptide=Potri.001G215400.2.p locus=Potri.001G215400 ID=Potri.001G215400.2.v4.1 annot-version=v4.1 MPNQQEHPKSQRNIISLMAETSSTNSIKIGTKMFSTQFVIIFSLFLSLPILFLLAPRIFPSHNPSIPISPSDELDDFVLFRKAIASASASTSASATRYPS AHSHLTSKSKKLKIAFLFLTNTDLFFAPLWEQFFKSADKNLFNIYVHADPHSNVTKPTGIFFSQFIPDAKRTYRASPTLISATRRLLANAILDDPTNTFF AVLSQYCIPLHSFKYVYNSLISSKSFDLSSPESDPESTKYNMKIQYKSFIEIISKDRRLWKRYVSRGKYAMMPEVPFEKFRAGSQFFVLTRRHALMVIED RRLWNKFKLPCYREDECYPEEHYFPTLLSMQDPDGCTKYTLTKVNWTGTRNGHPYTYKAAEISPVLIQELRQSNYSSSYLFARKFEPICLNPLMKIADKV IFRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.001G215400 [exp]	0	1
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	1.41	0.8060
AT5G05380		PRA1.B3	prenylated RAB acceptor 1.B3 (...		Potri.019G124100 [exp]	1.73	0.8198
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Potri.010G221500 [exp]	2.00	0.7701	PABAS
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	5.47	0.7642
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G259216 [exp]	6.70	0.6651
AT4G35510			unknown protein		Potri.007G063000 [exp]	6.92	0.7233
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.009G017300 [exp]	7.34	0.6579
AT4G27500		PPI1	proton pump interactor 1 (.1)		Potri.001G399400 [exp]	8.48	0.6859	Pt-PPI1.4
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.014G127400 [exp]	11.74	0.6428
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.001G409100 [exp]	15.55	0.6444

Compare expression of checked genes

Potri.001G215400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.