Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44160 580 / 0 Outer membrane OMP85 family protein (.1) AT3G48620 291 / 3e-97 Outer membrane OMP85 family protein (.1) AT5G19620 240 / 5e-73 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G46740 77 / 3e-15 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT4G09080 73 / 6e-14 TOC75-IV, ATTOC75-IV translocon at the outer envelope membrane of chloroplasts 75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV, Outer membrane OMP85 family protein (.1) AT1G35860 41 / 0.0008 TOC75-I translocon outer membrane complex 75-I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017100 [exp] 633 / 0 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G019000 [exp] 230 / 2e-69 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.003G204900 [exp] 230 / 2e-69 AT5G19620 892 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.003G158100 [exp] 81 / 2e-16 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.001G072800 [exp] 77 / 5e-15 AT3G46740 1289 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013360 [exp] 532 / 0 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10004104 [exp] 519 / 0 AT3G44160 566 / 0.0 Outer membrane OMP85 family protein (.1) Lus10031839 [exp] 219 / 5e-65 AT5G19620 1030 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10031272 [exp] 207 / 1e-60 AT5G19620 1018 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10004978 [exp] 77 / 4e-15 AT3G46740 1117 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10001566 [exp] 76 / 1e-14 AT3G46740 1210 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10016508 [exp] 74 / 4e-14 AT3G46740 1179 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10040775 [exp] 44 / 0.0002 AT3G46740 471 / 7e-161 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [poplar] [flax] MBB PF01103 [poplar] [flax] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.001G215500.1 pacid=42792490 polypeptide=Potri.001G215500.1.p locus=Potri.001G215500 ID=Potri.001G215500.1.v4.1 annot-version=v4.1 ATGGGAGCTCAAAAGAGCGTCCATGCTGGAAAAGCCAAGATTGATGCGAATGTTGATTTCACTCACAAGCTATGTGCTGCTTTGAGGCTTCCTTCTCTTA GGAGCACTGGAAGTCCTCTTTCTCTGATAATTGGGAGTCTTTGCATCAAACACCCCAATTTATTTGGTGGAAGTGAGAAGCTTGATGTATCATGGGATAA GGGGCTCTATGATTCAAATGTCATAATAGCTTTTAGAAGGCCAAGACCTGAGTGGCTTTCTCAAAAATGTTTTGTTATTCAGCATTCTTTTTCACCTGAA ATTGGGGTCCACGGTACACCAATTGACAATTTCTCTCGTTCTGGGAGCGGAGGTGTAAATTTGTCTCGAATATCTGTTGGTTTGGATAGAAATGAGCCTG CAACTTCTGATTGGAGCAGCACCACCAGTATCAAATTTGAGCATGTACAAATAGTGAACGATAGTTGGCGCTCTATAACCAGGGACATTGATGGGTTCCC ATTGACACGCAGTGGCAGTCCCCATGACAACATGGTAGTTTTGAAGCAAGAGTCTCAATATGCAAAAGCAAATGATCGCAGTTTTTATCAGTTTAGAATG CAAATTGAACAAGGGATTCCTATTCTATCAAAGTGGCTAATCTTTAACAAGTTCAAGTTTATTGCAACAAAAGGAGTCAAACTTGGACCAGCATTTTTAT TGGCAAGCCTGGCAGGTGGTTCTATTGTAGGGGACATGGCTCCTTACCAAGCATTTGCAATTGGAGGGCTTGGTAGTGTACGAGGATATGGTGAGGGTGC TGTTGGATCCGGGAGATCATGTCTGGTTGCAAATAGTGAATTGACATTTCCTTTGAATAAGATGTTGGACGGTGCTCTTTTCTTGGACTGTGGAACCGAT TTGAGATCTGCTTGTCTTGTACCTGGAAATCCAGCAATGAGGCAGGGCAAACCGGGATCCGGAGTTGGGCTTGGATATGGCCTTCGTTTCAAGTCTCCGA TTGGTCATTTTATGGTTAACCATGCCATCAATGATTTCCAACAAAGAACTGTTTACTTTGGCATCAGCAATCTCATCTGA
AA sequence Show only first row Show all	>Potri.001G215500.1 pacid=42792490 polypeptide=Potri.001G215500.1.p locus=Potri.001G215500 ID=Potri.001G215500.1.v4.1 annot-version=v4.1 MGAQKSVHAGKAKIDANVDFTHKLCAALRLPSLRSTGSPLSLIIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVIIAFRRPRPEWLSQKCFVIQHSFSPE IGVHGTPIDNFSRSGSGGVNLSRISVGLDRNEPATSDWSSTTSIKFEHVQIVNDSWRSITRDIDGFPLTRSGSPHDNMVVLKQESQYAKANDRSFYQFRM QIEQGIPILSKWLIFNKFKFIATKGVKLGPAFLLASLAGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANSELTFPLNKMLDGALFLDCGTD LRSACLVPGNPAMRQGKPGSGVGLGYGLRFKSPIGHFMVNHAINDFQQRTVYFGISNLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44160			Outer membrane OMP85 family pr...		Potri.001G215500 [exp]	0	1
AT1G47640			unknown protein		Potri.014G037100 [exp]	6.32	0.7660
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.009G020900 [exp]	10.09	0.6923
AT4G30310			FGGY family of carbohydrate ki...		Potri.018G095700 [exp]	16.73	0.6757
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	28.91	0.6607
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.007G042500 [exp]	29.46	0.6508
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.005G217700 [exp]	32.87	0.6565	TSA1.1
AT4G04320			malonyl-CoA decarboxylase fami...		Potri.004G005500 [exp]	37.62	0.6050
AT4G02740			F-box/RNI-like superfamily pro...		Potri.002G051800 [exp]	55.00	0.6505
AT4G29480			Mitochondrial ATP synthase sub...		Potri.006G231900 [exp]	65.90	0.6558
					Potri.001G129500 [exp]	79.89	0.6435

Compare expression of checked genes

Potri.001G215500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.