Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27210 1626 / 0 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 1605 / 0 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT4G03080 637 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G03445 454 / 7e-146 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G59160 270 / 1e-82 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT1G64040 268 / 1e-81 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT2G39840 268 / 2e-81 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G27840 267 / 2e-81 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G46820 261 / 4e-79 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 260 / 8e-79 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016900 [exp] 1732 / 0 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.014G135800 [exp] 633 / 0 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.002G213300 [exp] 626 / 0 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.005G024100 [exp] 274 / 5e-84 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G045900 [exp] 272 / 6e-83 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 271 / 1e-82 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 269 / 3e-82 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 266 / 6e-81 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.008G060800 [exp] 263 / 4e-80 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008369 [exp] 1617 / 0 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10013357 [exp] 1604 / 0 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 1562 / 0 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10009783 [exp] 526 / 4e-173 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10024773 [exp] 423 / 8e-137 AT4G03080 853 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10024772 [exp] 394 / 4e-130 AT4G03080 478 / 5e-165 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10021872 [exp] 270 / 4e-82 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 266 / 7e-81 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016489 [exp] 265 / 2e-80 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10030163 [exp] 263 / 6e-80 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0186 [poplar] [flax] Beta_propeller PF07646 [poplar] [flax] Kelch_2 Kelch motif CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.001G215700.1 pacid=42790318 polypeptide=Potri.001G215700.1.p locus=Potri.001G215700 ID=Potri.001G215700.1.v4.1 annot-version=v4.1 ATGGACTTGGACGCGTCGATGGCGGCGACCGATCACGATCCGGCGGTGCAGAGCGCTAGTTCTGCGCCAGCAGAAATGGACGGGGAACAGATAGGGGAGC AGTCGCAGCAGCCGGCGGGATCTCAGGATACGTCAACGGCGGCGGTTGCGGGTTCTAGTACCCCTACAACGGCCCCGCAGCAAGTAGCGCAGGCGCAACA GCAGAGTCCGGTGGTGGGGCCGAGACATGCGCCCACTTATTCGGTGGTGAATGCGAATATGGATAAGAAAGAGGATGGGCCTGGGCCTAGGTGTGGGCAT ACCTTGACTAATGTGGCTGCTGTCGGAGAAGAAGGGACGCCTGGGTATATTGGACCAAGGTTGATCTTGTTTGGCGGTGCCACGGCACTTGAGGGAAATT CTGCCTCTACTGGGACTCCTTCTTCGGCTGGGAGTGCTGGAATCAGACTAGCAGGCGCCACCGCTGATGTTCACTGTTATGATGTGTTAACAAATAAATG GACCAGGATTACTCCATTTGGAGAACCACCCACACCAAGGGCTGCCCATGTGGCAACTGCCGTGGGAACTATGGTAGTAATTCAGGGTGGAATTGGTCCA GCTGGTTTGTCTGCTGAGGATCTTCATGTCCTTGACCTAACACAGCAGCGGCCGCGGTGGCATAGAGTGGTTGTTCAAGGCCCAGGACCAGGCCCACGAT ATGGGCATGTGATGGCTTTGGTGGGTCAAAGGTATCTCATGGCAATTGGAGGGAATGATGGAAAAAGGCCTTTGTCTGACGTATGGGCCCTGGACACAGC TGCCAAGCCTTATGAATGGCGTAAACTAGAACCAGAAGGGGAAGGCCCACCACCATGCATGTATGCAACTGCAAGTGCTCGTTCAGATGGTCTGCTTCTG CTTTGTGGTGGGAGGGATGCAAACAGTGTGCCACTTGCAAGTGCCTATGGACTTGCTAAACACAGGGATGGCCGTTGGGAATGGGCAATTGCTCCTGGTG TCTCGCCATCTCCAAGATATCAACATGCAGCAGTCTTTGTAAATGCAAGGCTCCATGTATCTGGAGGGGCACTTGGTGGTGGTCGTATGGTAGAAGATTC ATCAAGTGTTGCTGTGTTGGATACTGCAGCAGGAGTTTGGTGTGATACAAAATCTGTGGTCACCAGTCCAAGGACTGGCAGGTACAGTGCCGATGCTGCT GGTGGAGATGCTGCAGTTGAGTTAACAAGGCGTTGCCGGCATGCAGCTGCTGCAGTTGGTGACTTGATTTTTATTTATGGCGGCTTACGTGGCGGGGTGT TGCTTGATGACCTACTTGTTGCTGAAGATCTGGCTGCTGCTGAAACAACAAGTGCAGCTTCCCATGCTGCAGCTGCAGCCGCTGCATCCAATGTACAAGC AGGTCGGGCACTTGGAAGATACGGATTTGTGGATGAAAGAACTAGGCAAACCATGCCTGAAGCAGCACCTGATGGTTCTGTTGTACTGGGCAATCCAGTT GCTCCTCCAGTAAATGGTGACATGTACACTGATATAAGCACAGAGAATGCCATGCTTTCTGGACCGAGGAGGACAAACAAAGGTGTTGAGTATTTGGTTG AAGCAGCAGCTGCAGAAGCTCAGGCTATCAGTGCCACTCTGGCTGCTGCCAAGGCACGGCAAGTTAATGGAGAAGTTGAACTACCTGATAGAGATCGTGG GGCAGAGGCTACTCCTAGCGGGAAACAAATATCTACTTTGATTAAGCCTGATTCTGCTGGATCAAACAACATCGCTCCTGCTGGAGTTCGGTTACATCAC AGAGCTGTTGTTGTAGCTGCTGAGACTGGTGGGGCTTTAGGTGGCATGGTCAGACAGCTTTCAATCGATCAGTTTGAAAATGAAGGCAGGCGGGTAAGTT ATGGGACCCCTGAGAGTGCAACTGCAGCTAGGAAACTACTGGATCGACAAATGTCCATCAATAGCGTGCCAAAAAAGGTTGTGGCACATCTCTTAAAGCC TCGTGGTTGGAAACCTCCAGTTCGCCGGCAGTTTTTCTTAGATTGCAATGAAATAGCAGATCTTTGTGACAGTGCTGAAAGGATATTTTCAAGTGAACCA AGTGTTTTACAGCTTAAGGCTCCTATCAAGATATTTGGTGATTTGCACGGGCAGTTTGGGGATCTGATGCGCCTTTTTGATGAATATGGTTCACCTTCAA CTGCTGGTGACATTGCATATATCGACTATCTGTTCCTAGGAGATTATGTTGATCGTGGCCAGCACAGCTTGGAGACCATGACTCTTCTGCTTGCTCTGAA GGTTGAGTATCCCAACAATGTACATTTAATTCGTGGGAACCATGAAGCTGCAGATATCAATGCCCTTTTTGGATTCCGGATTGAGTGCATTGAGCGAATG GGTGAGAGAGATGGAATTTGGGTTTGGCATCGGATAAATCGATTGTTCAATTGGCTTCCTTTGGCAGCACTAATTGAGAAGAAAATCATTTGTATGCATG GTGGTATTGGTCGGTCAATAAATCATGTGGAACAGATTGAGAATCTTCAACGTCCAATTACCATGGAAGCAGGTTCAATTGTGCTTATGGATTTGTTATG GTCTGATCCAACAGAAAATGACAGCGTGGAAGGATTGCGACCAAATGCTAGAGGTCCAGGGTTGGTAACATTTGGGCCTGATCGTGTTATGGAGTTCTGC AATAACAATGATCTTCAGTTGATTGTACGTGCCCATGAATGTGTGATGGATGGCTTCGAGCGTTTTGCTCAAGGACATTTAATTACACTTTTCTCCGCCA CCAATTATTGTGGTACTGCAAATAATGCAGGGGCAATCTTAGTTTTGGGAAGAGACCTTGTTGTGGTTCCCAAACTCATTCATCCTTTACCACCAGCAAT TTCATCACCAGAAGCTTCACCCGAACGTCATATCGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCTCCTACACCAACTAGAGGCCGTCCTCAA GTAACAAATGATCGTGGCTCTCTTGCTTGGATATAA
AA sequence Show only first row Show all	>Potri.001G215700.1 pacid=42790318 polypeptide=Potri.001G215700.1.p locus=Potri.001G215700 ID=Potri.001G215700.1.v4.1 annot-version=v4.1 MDLDASMAATDHDPAVQSASSAPAEMDGEQIGEQSQQPAGSQDTSTAAVAGSSTPTTAPQQVAQAQQQSPVVGPRHAPTYSVVNANMDKKEDGPGPRCGH TLTNVAAVGEEGTPGYIGPRLILFGGATALEGNSASTGTPSSAGSAGIRLAGATADVHCYDVLTNKWTRITPFGEPPTPRAAHVATAVGTMVVIQGGIGP AGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLSDVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLL LCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAA GGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTSAASHAAAAAAASNVQAGRALGRYGFVDERTRQTMPEAAPDGSVVLGNPV APPVNGDMYTDISTENAMLSGPRRTNKGVEYLVEAAAAEAQAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQISTLIKPDSAGSNNIAPAGVRLHH RAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVVAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEP SVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETMTLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERM GERDGIWVWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFC NNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPEASPERHIEDTWMQELNANRPPTPTRGRPQ VTNDRGSLAWI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.001G215700 [exp]	0	1
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018400 [exp]	1.73	0.8171
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	4.00	0.7921
AT5G35910			Polynucleotidyl transferase, r...		Potri.019G038701 [exp]	11.74	0.7927
AT1G34320			Protein of unknown function (D...		Potri.019G085900 [exp]	16.97	0.7663
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.015G089000 [exp]	20.32	0.7659
AT1G27070			5'-AMP-activated protein kinas...		Potri.010G034600 [exp]	28.74	0.7051
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.009G016900 [exp]	30.29	0.7399
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Potri.018G039500 [exp]	35.66	0.7617
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	40.24	0.7536
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.003G196900 [exp]	40.47	0.7461

Compare expression of checked genes

Potri.001G215700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.