Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22080 324 / 5e-113 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G65280 70 / 1e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G59610 48 / 1e-06 Chaperone DnaJ-domain superfamily protein (.1.2) AT5G05750 48 / 3e-06 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G57340 45 / 3e-05 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G49060 43 / 0.0001 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT2G35720 41 / 0.0004 OWL1 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT3G12170 41 / 0.0004 Chaperone DnaJ-domain superfamily protein (.1) AT3G04980 41 / 0.0005 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G16680 41 / 0.0006 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016700 [exp] 369 / 2e-130 AT5G22080 313 / 1e-108 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.019G083700 [exp] 61 / 2e-10 AT1G65280 479 / 2e-163 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.006G153700 [exp] 49 / 2e-06 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.002G105500 [exp] 42 / 0.0002 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G211300 [exp] 42 / 0.0002 AT3G06778 170 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G013200 [exp] 42 / 0.0003 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.001G072700 [exp] 42 / 0.0003 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G156100 [exp] 40 / 0.0009 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 40 / 0.0009 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013354 [exp] 329 / 1e-114 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10004099 [exp] 329 / 1e-114 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10017919 [exp] 70 / 2e-13 AT1G65280 554 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014815 [exp] 69 / 3e-13 AT1G65280 522 / 4e-179 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10030079 [exp] 46 / 1e-05 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10006515 [exp] 44 / 6e-05 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10027316 [exp] 43 / 0.0001 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10019421 [exp] 43 / 0.0001 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10043277 [exp] 43 / 0.0002 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10037502 [exp] 42 / 0.0002 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.001G215800.1 pacid=42791815 polypeptide=Potri.001G215800.1.p locus=Potri.001G215800 ID=Potri.001G215800.1.v4.1 annot-version=v4.1 ATGGGAGAAGCAAGCTCCACCACCGCCTACGATGATATGCTTCTCAAGAGCTTCTTCGCCGAAGTCAGCGAAGTCGAGCGAGATAACGAAGTCACCAGGA TTCTTTCATGCTTCAAGTTAAACCCATTTGAGTATCTAAATTTACCATTTGAAGCATCTCCAGAGGATATCAAAAAGCAGTATCGCAAGTTATCTTTGTT GGTTCATCCTGATAAGTGCAAGCATCCACAAGCAAAAGAAGCTTTTGGTGCATTGGCAAAAGCCCAGCAACTCTTACTTGAAGAACAAGAAAGAGATTAT GTTCTTACCCAGGTTAATGCAGCAAAAGAAGAACTTCGAGCAAAGAGGAAGAAGCAGTTGAGGAAAGATACAGCCTCCAAAATAAAGTCATTGGTTGACG AGGGAAAATATGATCAACAATACGAACAGTCAGAGGAGTTCCAGCGGGAGCTCAAATTGAAGGTTCGAGAAATATTAACTGATCAAGAATGGCGGAGGAG GAAAATGCAGATGAGGATATCAGAAGAGGAAGGTAGATTGAAGAAGGATGAAGAAGAACAAAAGGAGATGTGGAAGAGAAAGCGTGAACATGAGGAGCAG TGGGAAGGAACAAGAGAAAAGAGGGTTTCAAGCTGGAGAGATTTTATGAAGACAGGAAAGAAGGGCAAAAAGGGAGAGATTCGACCACCTAAACTCAAGA CCGAGGATCCCAACAAGTCCTATGTTCAAAGGCCAGTAAAGCGAGGTTAA
AA sequence Show only first row Show all	>Potri.001G215800.1 pacid=42791815 polypeptide=Potri.001G215800.1.p locus=Potri.001G215800 ID=Potri.001G215800.1.v4.1 annot-version=v4.1 MGEASSTTAYDDMLLKSFFAEVSEVERDNEVTRILSCFKLNPFEYLNLPFEASPEDIKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLLEEQERDY VLTQVNAAKEELRAKRKKQLRKDTASKIKSLVDEGKYDQQYEQSEEFQRELKLKVREILTDQEWRRRKMQMRISEEEGRLKKDEEEQKEMWKRKREHEEQ WEGTREKRVSSWRDFMKTGKKGKKGEIRPPKLKTEDPNKSYVQRPVKRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	0	1
AT4G15030			unknown protein		Potri.001G266200 [exp]	1.41	0.8869
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Potri.001G412800 [exp]	2.23	0.8420
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.007G000600 [exp]	4.12	0.8871
AT2G15270			unknown protein		Potri.001G300300 [exp]	6.00	0.8399
AT3G12350			F-box family protein (.1.2)		Potri.002G117900 [exp]	10.48	0.8176
AT3G07440			unknown protein		Potri.002G250500 [exp]	14.69	0.8326
AT4G07990			Chaperone DnaJ-domain superfam...		Potri.002G114600 [exp]	15.87	0.8659
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Potri.017G091700 [exp]	16.49	0.8125
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.012G003700 [exp]	19.41	0.7951	CDC2.6
AT3G60410			Protein of unknown function (D...		Potri.014G044800 [exp]	19.49	0.7432

Compare expression of checked genes

Potri.001G215800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.