Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT1G54740 53 / 2e-07 Protein of unknown function (DUF3049) (.1) AT4G02810 52 / 5e-07 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT5G19260 45 / 5e-05 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT1G03170 45 / 5e-05 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT3G06020 43 / 0.0004 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016600 [exp] 659 / 0 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.008G149600 [exp] 68 / 3e-12 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 68 / 3e-12 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 65 / 3e-11 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 64 / 3e-11 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.004G201500 [exp] 61 / 7e-10 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1) Potri.009G162800 [exp] 54 / 9e-08 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.013G027100 [exp] 49 / 5e-06 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.005G037600 [exp] 47 / 3e-05 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004098 [exp] 250 / 2e-76 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 223 / 5e-66 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10042576 [exp] 66 / 1e-11 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 64 / 5e-11 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 61 / 5e-10 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004863 [exp] 54 / 5e-08 AT5G22390 97 / 9e-25 Protein of unknown function (DUF3049) (.1) Lus10020626 [exp] 54 / 7e-08 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 54 / 8e-08 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 47 / 1e-05 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10025222 [exp] 44 / 3e-05 ND 37 / 0.002
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [poplar] [flax] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Potri.001G216000.1 pacid=42790522 polypeptide=Potri.001G216000.1.p locus=Potri.001G216000 ID=Potri.001G216000.1.v4.1 annot-version=v4.1 ATGTCATCTTTTAGCAAGAGCCTTCGCTTATCTTCTTCATCTCTCGAAGAAGAGAACTTGATGCTCCCAAAGAGGCAGGGCATAGTTTCCATTCTTGGGT CTGATGTTGAAAGAACCAAGTCTGCTGCAGCTTCTCTAAGGAGAACTCTCTCCGCTGATATGTCCTCCAAGAAATGGCAGGCACAACATGGGTTCTATCC CCTCAAGAAAATTGCATCGTCTGACCATTTCCCAGCCTGTAATATCACAGACTCTTCATCTTCAGAAGATGAGGATTATGAAGACAGGCCTAAAGGGACT GAAGCTCAAGGGCAATTTGATATCTGGAGCTCAATTCAAGAAGACAAGAACAAGAAAGAGGTTGAAAAGCCAGGGCAATTTGATGTGTGGAGCTCAATCT TATCACAGAAGACAAAAGAGGACTCCAAGAATGTTCAACCTTATGTCCACCCTCTTGTTAAGAGATCAGCAAGTTCTTTAAGCAAGAAGAGCCTTGAGAT ATGCACTGAAAGTCTTGGATCAGAAACTGGTTCTGATGGGTTCTCGTCATATCCACCATCAGAGACTGGTGATGCAGAGGAGGACAAAGAAGAAGAGCAA AGACAAGAGAGAGTGACACTAAAGTTTGACACGGAGGATTTGCGAGTAGCCAAGTATAATCTTGCAGCAGCAAATTGCAAGAAATCTCAACCAAGATCAT TCCCGCCTCCAATCCCTTCACTATCTAGCCGTGATGGGGCTTCTGTACTCATGAAGTCTCGTCGCGATAATGGTAGATTGGTTCTTGAAGCTGTTTCTGT TCCTTCACAGAAAAACTTCCATGCTCAGCGCCAAGACGGTCGCCTTGTGCTCACCTTTGCCAATACTGTAGATCAAGACGAAGAAGAGAGACAAAAGAAT GAAGAAATGAATGTTATGGAACAGTTTGATGTCGAGATTGAGAATTCTGAAGATGAAAAGGAGTGTGAAGAAGATGAAGAGGAAGTGGAAGAAGAAATAG AGGAAGATGTGGTGGAGGATGGCGAGAACGAGAGAGGAGGAGACAAGGAGGCGAGGTTTGTGATGGAGGAAGCACCAAAACTGTCAAGTGGGGTCATAAG TGTGCATAGGCTAGCGCTCATGATGAACAAGTCCTTGGTGTTCGCAAATAGAAACCCAACATGGCCTAACAAGTTCAATGACATTTCCAAATTTGGTGAG GTGGAGCCAATCACCTCCCTGACACAATCACTCCCACCGCGGCCCCCGGTGGCTCGGATGATACCATCTCCACCAGCAGCTACCATGGCAACCACCGAAG TCACAGCAAAGGCAGCTGCGTCTTTTAATGCTTGTGAGTACTTTTGGAAGCCAAAGTCCATGACAACAACAACAACATCAGTTCTTAACCCAATTAGCCA AAAACAAGCATCGTCATTAGGAATCCATGACAACAAATTGGCCCTTTCGAAGAAGTTTGTTCCAAATGAACAGCAGGAATTGGTGGTATTGAGAGGGAAC AAGGGAGATTACTTAGTTCCTTTGTTAAAGAGTTGCAAGGAGCCAAGGAAGTCACTATTGTTTTGGGAGCCCCATTGCATTGCCACCTCCTGA
AA sequence Show only first row Show all	>Potri.001G216000.1 pacid=42790522 polypeptide=Potri.001G216000.1.p locus=Potri.001G216000 ID=Potri.001G216000.1.v4.1 annot-version=v4.1 MSSFSKSLRLSSSSLEEENLMLPKRQGIVSILGSDVERTKSAAASLRRTLSADMSSKKWQAQHGFYPLKKIASSDHFPACNITDSSSSEDEDYEDRPKGT EAQGQFDIWSSIQEDKNKKEVEKPGQFDVWSSILSQKTKEDSKNVQPYVHPLVKRSASSLSKKSLEICTESLGSETGSDGFSSYPPSETGDAEEDKEEEQ RQERVTLKFDTEDLRVAKYNLAAANCKKSQPRSFPPPIPSLSSRDGASVLMKSRRDNGRLVLEAVSVPSQKNFHAQRQDGRLVLTFANTVDQDEEERQKN EEMNVMEQFDVEIENSEDEKECEEDEEEVEEEIEEDVVEDGENERGGDKEARFVMEEAPKLSSGVISVHRLALMMNKSLVFANRNPTWPNKFNDISKFGE VEPITSLTQSLPPRPPVARMIPSPPAATMATTEVTAKAAASFNACEYFWKPKSMTTTTTSVLNPISQKQASSLGIHDNKLALSKKFVPNEQQELVVLRGN KGDYLVPLLKSCKEPRKSLLFWEPHCIATS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22090			Protein of unknown function (D...		Potri.001G216000 [exp]	0	1
AT1G10380			Putative membrane lipoprotein ...		Potri.010G040500 [exp]	10.29	0.7670
AT5G02570			Histone superfamily protein (....		Potri.017G123700 [exp]	11.04	0.7505	HTB903
AT3G55820			Fasciclin-like arabinogalactan...		Potri.008G065101 [exp]	27.27	0.7452
AT5G54855			Pollen Ole e 1 allergen and ex...		Potri.011G137100 [exp]	28.98	0.7188
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Potri.004G174900 [exp]	29.24	0.7142	RAC4.3
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	35.28	0.7330
AT5G35090			unknown protein		Potri.018G114401 [exp]	53.57	0.7097
AT3G61550			RING/U-box superfamily protein...		Potri.014G091000 [exp]	55.79	0.7019
AT3G20410		CPK9	calmodulin-domain protein kina...		Potri.007G042700 [exp]	70.35	0.6871
AT2G18196			Heavy metal transport/detoxifi...		Potri.001G452400 [exp]	70.42	0.6862

Compare expression of checked genes

Potri.001G216000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.