Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11840 302 / 8e-99 PUB24 plant U-box 24 (.1) AT2G35930 273 / 2e-88 PUB23 plant U-box 23 (.1) AT3G52450 255 / 8e-81 PUB22 plant U-box 22 (.1) AT1G66160 138 / 2e-36 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT1G49780 132 / 1e-34 PUB26 plant U-box 26 (.1) AT3G19380 131 / 3e-34 PUB25 plant U-box 25 (.1) AT5G37490 102 / 9e-24 ARM repeat superfamily protein (.1) AT5G64660 82 / 6e-17 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G54850 82 / 1e-16 ATPUB14 plant U-box 14 (.1) AT5G09800 81 / 2e-16 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016100 [exp] 691 / 0 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.006G202700 [exp] 427 / 1e-148 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 410 / 6e-142 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.016G069400 [exp] 319 / 3e-106 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 310 / 1e-102 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.006G202600 [exp] 305 / 1e-100 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.001G216100 [exp] 301 / 5e-99 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.002G174500 [exp] 197 / 6e-59 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 188 / 3e-55 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000800 [exp] 400 / 1e-137 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 394 / 4e-135 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10013584 [exp] 308 / 2e-101 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 300 / 2e-98 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10004191 [exp] 298 / 2e-95 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 281 / 7e-91 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10016166 [exp] 281 / 7e-91 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 274 / 2e-88 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10004095 [exp] 151 / 2e-43 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10001079 [exp] 149 / 2e-40 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G216300.1 pacid=42793034 polypeptide=Potri.001G216300.1.p locus=Potri.001G216300 ID=Potri.001G216300.1.v4.1 annot-version=v4.1 ATGGCTGATATAGAAATTCCTGAATATTTTCTATGTCCCATATCGCTACAAATCCTGAAAGATCCAGTAACAACAATAACAGGCATCACATACGAGCGAG AAAGCATAGAACACTGGTTGAAGACAGCCCAAGGAAACCCTACGTGTCCAGTTACAAAGCAGCCTTTGCCAGGAGATTCTGAGTTGATACCAAATCACAC ATTGAGGCGGCTAATTCAATCATGGTGCACTCTGAATGCCATCGATGGCATCGATCGAATTCCCACTCCGAAATCTCCTATCAAGAAGAGCCAAGTCCTT AGACTCATCAAGGATCTTGATGTCCCTGATCACTCTTGTACTAAAGCATTAATGAAACTGGAAGCCCTGGCCGCAGAGAATGAAAGGAATAGGACTTGCA TGGTGGAAGCTGGCGTGGCAAAAGCTATGGTTCTTTTCATTATAAAATGTTTCAAAGAAGGAAAGACAACCGGCCTTGAAGAAGGTTTGAGAATTCTTTA TCTTATTTGGAACCAATCACAAGAAATCAAGCTTCTTGTCAGGGAGAACCAAGAATTCATCGATTCATTGACATGGACCTTACGTTGTAAGATAGATAAT CATGTTGATGTCAAGACTCACGCAATGCTAGTATTGCACAAAACAATATGCGTTGTTTGTCAAGAGCTATTGGAGAGATTAAAGGTTGATTTCTTCAAAG AGATCGTAACAAGGGTTCTTAGGAAGAGAATCTCTAAACTAGCCATAAAGTCAGCCTTGCTTGTCCTAACAGAAGTGTGTTTTGGGGGCAGAAACAGAAT GAAAATTGTTGAAGCTAATGCGGTTTTTGAGCTCATTGAACTAGAGCTAGAGAAACCCGAGAGGAACATCACAGAGCTCATTTTTAATCTTTTGGCTCAG TTGTGTTCATGTGCAGCTGGGAGAGAACAGTTTCTAAAGCACGCAGGAAGCATTGCCCTGCTTTCAAAGAGGGTCCTTAGGGTTTCTCCAGCAACAGATG ATCGAGCAGTGCACATACTTGATTCAATCTCAAAATTTTCTGCTGGAGACGAAGCTGTTCTAGAGATGTTGAGAGTTGGTGCTGTGTCAAAACTACTCTG CATGCTTATTCAGGCAGACTGTGCTCCCTATTTAAAAAAGAAAGCAAGAGGGATCCTCAGGTTGCACTCCAATACGTGGAACAATTCTCCTTGCATTGCC GTAGATTTGTTAACAAGGTATCCATAA
AA sequence Show only first row Show all	>Potri.001G216300.1 pacid=42793034 polypeptide=Potri.001G216300.1.p locus=Potri.001G216300 ID=Potri.001G216300.1.v4.1 annot-version=v4.1 MADIEIPEYFLCPISLQILKDPVTTITGITYERESIEHWLKTAQGNPTCPVTKQPLPGDSELIPNHTLRRLIQSWCTLNAIDGIDRIPTPKSPIKKSQVL RLIKDLDVPDHSCTKALMKLEALAAENERNRTCMVEAGVAKAMVLFIIKCFKEGKTTGLEEGLRILYLIWNQSQEIKLLVRENQEFIDSLTWTLRCKIDN HVDVKTHAMLVLHKTICVVCQELLERLKVDFFKEIVTRVLRKRISKLAIKSALLVLTEVCFGGRNRMKIVEANAVFELIELELEKPERNITELIFNLLAQ LCSCAAGREQFLKHAGSIALLSKRVLRVSPATDDRAVHILDSISKFSAGDEAVLEMLRVGAVSKLLCMLIQADCAPYLKKKARGILRLHSNTWNNSPCIA VDLLTRYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.001G216300 [exp]	0	1
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Potri.017G071500 [exp]	14.73	0.7869	MYB24.1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G033500 [exp]	21.95	0.7677
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Potri.009G134400 [exp]	24.55	0.7657	Pt-BGAL11.2
					Potri.006G101150 [exp]	30.78	0.7643
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Potri.015G145100 [exp]	35.07	0.7636
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.002G224100 [exp]	40.84	0.7631	ACO2,ACO1.1
					Potri.006G038300 [exp]	42.16	0.7626
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.006G023301 [exp]	43.72	0.7619
AT5G44400			FAD-binding Berberine family p...		Potri.011G159200 [exp]	46.37	0.7618
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101100 [exp]	57.46	0.7596

Compare expression of checked genes

Potri.001G216300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.