Plant FIBer expression Database

Potri.001G216400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22100 473 / 2e-167 RNA cyclase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G016000
[exp]
657 / 0 AT5G22100 515 / 0.0 RNA cyclase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013351
[exp]
541 / 0 AT5G22100 499 / 9e-178 RNA cyclase family protein (.1)
Lus10004092
[exp]
534 / 0 AT5G22100 491 / 6e-175 RNA cyclase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0290 EPT_RTPC PF01137 RTC RNA 3'-terminal phosphate cyclase
CL0290 PF05189 RTC_insert RNA 3'-terminal phosphate cyclase (RTC), insert domain
Representative CDS sequence
>Potri.001G216400.2 pacid=42790124 polypeptide=Potri.001G216400.2.p locus=Potri.001G216400 ID=Potri.001G216400.2.v4.1 annot-version=v4.1
ATGGGGAAGGGAAGCTACAAGAAGCTAAAGGGTAGCCAAAACTTCCGTCAAAGACTGATATTAGCGACGCTCTCCGCCACACCTATCATTATCAAGGGCA
TTCGAGCCAATGACATGCTTCCTGGCCTCCGCCTCCATGAAGTTTCTCTTCTTCGCCTCCTCGAGAAGATTTCTGATGACTGTGTTGTCAAAATCAATGA
AACAGGAACAATGGTCCAGTACAAGCCTGGGATTTTGATGGGTGGGAGACATCTTGTGCACGATTGTGGTGAAAGTCGAGCTATTGGGTATTTCTTGGAG
CCATTACTTGTTCTTGGGTTGTTTTCGAAAAAGGCCCTTTCGATAAGACTCAAAGGAATTACAAATGATTCTAATGACCCATGTGTTGACACTTTTCGTT
CCACTACCTTACCATTATTGAAGCAATTTGGAGTTCCATCAGAAGGATTGGAGCTGAAAATAGAAAGTCGTGGTGCTCCACCACATGGTGGCGGAGAAGT
TCTTTTATCAATTCCCAATATTCAAAGTTTAACGCAGGCAGTCACATGGATTGATGAGGGAATGGTTAGGAGGATTAGAGGGGTGACTTTCTCAACCAGA
GTATCTTCTCAGTTTGAGAATACTATGATACATGCTGCTCGAGGAATCTTTAATCATTTGCTTCCTGATGTCCACATATTTACTGATCATAAAGCTGGTC
CACAAGCTGGAAATTCACCTGGTTATGGAATATCCTTGGTTGCGGAAACTACTTCCGGTTGCTTCATCTCTGCTAATACTGCAGTTTCTTATGCACGAAC
GGAAGATGGTGGAATGGAAGATGAGAAAGGAGAGCTGATGCCTCCAGAAGATGTTGGTGAGCAAATTGCTTCTGTTCTCCTTCAGGAGATTGAACAGGGT
GGAGTTGTAGATACAACACACCAGGGTTTGTTGTTTCTTCTGTGTGCATTATGTCCACAAGATGTTTCAAAGATTCGCGTAGGGAAGCTTATACCCCATG
GAATAGAAGTACTAAGGCTCATCAGAGATTTTTTGGGTGTTAAATTCGTCATTAAGCCAGATCCATCCACAGGGACAGTCATACTCAAATGTGTGGGAAG
TGGATTGAAGAATCTTTCTAGAAAGAGTTCTTGA
AA sequence
>Potri.001G216400.2 pacid=42790124 polypeptide=Potri.001G216400.2.p locus=Potri.001G216400 ID=Potri.001G216400.2.v4.1 annot-version=v4.1
MGKGSYKKLKGSQNFRQRLILATLSATPIIIKGIRANDMLPGLRLHEVSLLRLLEKISDDCVVKINETGTMVQYKPGILMGGRHLVHDCGESRAIGYFLE
PLLVLGLFSKKALSIRLKGITNDSNDPCVDTFRSTTLPLLKQFGVPSEGLELKIESRGAPPHGGGEVLLSIPNIQSLTQAVTWIDEGMVRRIRGVTFSTR
VSSQFENTMIHAARGIFNHLLPDVHIFTDHKAGPQAGNSPGYGISLVAETTSGCFISANTAVSYARTEDGGMEDEKGELMPPEDVGEQIASVLLQEIEQG
GVVDTTHQGLLFLLCALCPQDVSKIRVGKLIPHGIEVLRLIRDFLGVKFVIKPDPSTGTVILKCVGSGLKNLSRKSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22100 RNA cyclase family protein (.1... Potri.001G216400
[exp]
0 1
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Potri.006G151800
[exp]
6.48 0.7890 NFC905,ATMSI4.4
AT2G41500 EMB2776, LIS LACHESIS, WD-40 repeat family ... Potri.006G045800
[exp]
6.63 0.8398
AT1G16280 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis tha... Potri.008G084700
[exp]
8.00 0.8233
AT2G47420 DIM1A adenosine dimethyl transferase... Potri.014G121200
[exp]
9.53 0.8066
AT3G62940 Cysteine proteinases superfami... Potri.014G134100
[exp]
9.79 0.7681
AT1G53900 Eukaryotic translation initiat... Potri.001G163300
[exp]
13.19 0.7714
AT1G09620 ATP binding;leucine-tRNA ligas... Potri.004G226700
[exp]
13.85 0.8099
AT3G51270 protein serine/threonine kinas... Potri.017G001100
[exp]
19.28 0.7904
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Potri.017G120100
[exp]
19.44 0.7847
AT1G72320 APUM23 pumilio 23 (.1.2.3) Potri.003G073000
[exp]
19.49 0.7996

Potri.001G216400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.