Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27230 363 / 3e-113 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 219 / 4e-62 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT1G06150 206 / 1e-55 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31280 204 / 6e-55 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT5G53900 71 / 1e-12 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT5G24352 59 / 1e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 64 / 2e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 64 / 3e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT2G46510 49 / 1e-05 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT5G41315 46 / 0.0001 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017700 [exp] 1559 / 0 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 287 / 1e-83 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.003G144900 [exp] 284 / 2e-82 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.005G222500 [exp] 234 / 1e-65 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 229 / 8e-64 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.006G090000 [exp] 98 / 1e-20 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G116400 [exp] 70 / 3e-12 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.001G397800 [exp] 68 / 1e-11 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.014G024000 [exp] 66 / 5e-11 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013348 [exp] 789 / 0 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10000609 [exp] 236 / 8e-66 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10001527 [exp] 229 / 1e-63 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10033222 [exp] 226 / 1e-62 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10033880 [exp] 221 / 9e-61 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10010877 [exp] 142 / 1e-34 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012986 [exp] 71 / 2e-12 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10029179 [exp] 68 / 1e-11 AT1G60060 429 / 6e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10024800 [exp] 67 / 2e-11 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10018736 [exp] 61 / 1e-09 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G216900.2 pacid=42793657 polypeptide=Potri.001G216900.2.p locus=Potri.001G216900 ID=Potri.001G216900.2.v4.1 annot-version=v4.1 ATGGGTCTTTTGTTGAGAGAAGTTTTGAAGATACTTTGTGGTGTTAATCAATGGTGTTATGCTGTTTTTTGGAAGATCGGATGCCAGAATCCTAAGTTGT TAATCTGGGAGGAATGTCACTACGAGCCAACATCATGTTCAGTTCCCCCAAGTACTTCTGGAACTGAGAACCTAGCACTTCCTTTTGGAGAGTGGGAAGG ACACTTTGGTTCTGATGCTCACTCCTCTCAGCTTGGAATTCAAGCGGGGGGTAGACTCTGTTCGCTTATTAACAAAATGATGGTGAATAATCAGGTTAAT ATTGTAGGCGAAGGAATCGTTGGGCGTGTTGCGTTTACAGGAAACCATGAGTGGATTCTTGCAAATAATTACAGTAAAGATGCCCATCCTCCAGAAGTTT TAAATGAGGTTCATCACCAGTTTTCAGCTGGGATGCAGACAATTGCTGTTATTCCTGTTTGTCCTCATGGTGTACTTCAACTTGGTTCTTCCTTGGCTAT TCTGGAGAATATTGGGTTTGTGAATAACGTGAAGAGTTTGATCCTTCAACTAGGGTGTGTCCCTGGAGCACTTCTGTCTGACAACCATATGGAAAAAGAA CCCACAGAAAGAATTGGAATGCCTATTTCCTGTGGAATGGCTCTTCCTGTGTGTTTTTCTGGAACTTATAAGGTGCCAAGCTCCACTCCTTCCTTGGCAG ACAGCTGCAACCAACAAATAATCTCATCTCAGGAGGCTTCTAGAATTGTTGGTCAACCTTCTTGTTCTCAAACTAGACAGGTTCAGGATGATCAACATGC TACTTCTTCGGCCATTCATATCCCCAATGCAACTGGAATTTTAGCTAAATCTTGTGATGACTTCCGTGAACCAAAAATTACCTCACTTATGAAGCCAGAC AATCCATTCATGGGCCAACTAGCAAATGGAGTTGTTGGAGCTGAAGTGATCCCCTCAAATCCTGGTGCGTGGCTGAACCACCAGACTGCTTCAAGCAGTT CAAGACTTGGATTCAATCATCGACCAATTATTAGTCAGTCAAATACCAATAGTAGCATACTAAAATTACTGGAACAGCAGATTTTCTCTGATGTTGGTGC ACAAAATCATGTTAGCCACTATAAAAATGAATCAAATGGCCTTACTATGGCCCACCCAAGGACAAATGAAGGCCATTTTCTTACTTCTACTGGAGGTTCT CATATATCTGGACAGTTACCTAGTGAAGTGGGCACTAAGAGAAGAGCAAACTCCAATCTTTGTTCCTTATTAAAACCACAGAAATTGGCAGATATCAATC ACTCATCCACGCTTCTGGCAGGGGGTGGGACTCAAAATGTTGGTTCTTCAAGGGCAGAGGATGATCATTTATCTGGTCTGTTGGATCAATCAAGTGCGAG TGGCATTCTTTCAGGGGGTTCCAATCTTGAATATCCCTACACAGATGTGAAGCCTACTAAAAAGGAAGCAACTACAATGGAAAAAAAGATTGAAGGTGAT TTATTTCAAGCACTTAATGTCCAGCTGACTCAACCAGGTGAACATGTATATTTGGGTGAGAATGTTCTTGGTCCCGTTAATGATTGCCTGATGAGCGCTT CTGGAAGTCAGAATACTGTTACTGTAAATGCTAAGCGCGAGGAACCTTGTGCTCAACCTCCCTCTGGGGATGACTTGTATGATATTTTGGGTGTGGAATT TAAAAACAAATTACTCAACGGCAAGTGGAATAATTTACTTGGGGATGAACCGTGTGTGAAGACACAAGATATGGTTAAAGATGCTTCAACATTTATGAGC ATCCGGGAGGCAAATTCTGATCTTTTTTCACTTACTGGAGGAGTCTCAGATAGTAACATGTTCTCTGACCTGGGTACTGACCATCTTTTAGATGCTGTGG TATCTAAGGCGCACGCTGCTGCCAAACAGAGCTCAGATGATAATGTTTCTTGCAGAACAACATTGACAAAGATTAGTATGCCGTCCTTTCCCGGTGGTTC TGCCACCTATGGCAGGATTGGCATGTGTGATCAGGTGCAAAGGGAGTTAATTAGCCTGCCTAAAAGAGCAGGGACCATAGCATCTAGCTCTTTTAGATCT GGCTGCAGCAAGGATGATGTAGGAACTTGTTCTCAAACTACTTCCATTTATGGGTCCCAACTGAGTTCCTGGGTTGAGCAAGGGCATAATGCAGGGCATG ATTGTAGTGTTTCAACTGCATTTTCCAAGAAAAATGATGAAACAAGCAAGCCAAATCGCAAAAGGCTTAAAGCTGGAGAGAACCCAAGACCTAGGCCGAA AGATCGTCAGATGATCCAAGATCGTGTTAAGGAGTTGCGTGAGATTGTACCAAATGGAGCAAAATGTAGCATAGATGCTCTGCTTGAACGCACAATCAAG CATATGCTTTTCTTGCAAAGCGTGACAAAGCATGCAGATAAACTGAAACAAACTGGGGACTCCAAGCTTCTTAACAAGGAAAGTGGACTGCTTTTGAAGG AAAATTTTGAGGGAGGGGCAACATGGGCATTTGAAGTTGGTTCACAATCTATGGTTTGTCCTATCATAGTTGAAGATCTGAATCCACCTCGTCAGATGAT CGTGGAGATGCTTTGTGAAGAACGGGGCTTCTTTCTAGAGATAGCTGACTTAATTAGGGGATTGGGTTTGACAATCCTGAAGGGGGTGATGGAAACTCGA AATGACAAGATCTGGGCACGTTTTGCTGTAGAGGCAAACAGGGATGTAACAAGGATGGAAATATTTATGTCTCTTGTTCAACTTTTGGAGCAAACTGTCA AGGGCAGTGCACCACCAGTGGGTGCATTGGAGAATGGCAATACGATGGTTCATCACACGTTCCCCCAAGCTACCTCTATACCTGCAACTGGTATGCCTAG TAGTTTGCAGTGA
AA sequence Show only first row Show all	>Potri.001G216900.2 pacid=42793657 polypeptide=Potri.001G216900.2.p locus=Potri.001G216900 ID=Potri.001G216900.2.v4.1 annot-version=v4.1 MGLLLREVLKILCGVNQWCYAVFWKIGCQNPKLLIWEECHYEPTSCSVPPSTSGTENLALPFGEWEGHFGSDAHSSQLGIQAGGRLCSLINKMMVNNQVN IVGEGIVGRVAFTGNHEWILANNYSKDAHPPEVLNEVHHQFSAGMQTIAVIPVCPHGVLQLGSSLAILENIGFVNNVKSLILQLGCVPGALLSDNHMEKE PTERIGMPISCGMALPVCFSGTYKVPSSTPSLADSCNQQIISSQEASRIVGQPSCSQTRQVQDDQHATSSAIHIPNATGILAKSCDDFREPKITSLMKPD NPFMGQLANGVVGAEVIPSNPGAWLNHQTASSSSRLGFNHRPIISQSNTNSSILKLLEQQIFSDVGAQNHVSHYKNESNGLTMAHPRTNEGHFLTSTGGS HISGQLPSEVGTKRRANSNLCSLLKPQKLADINHSSTLLAGGGTQNVGSSRAEDDHLSGLLDQSSASGILSGGSNLEYPYTDVKPTKKEATTMEKKIEGD LFQALNVQLTQPGEHVYLGENVLGPVNDCLMSASGSQNTVTVNAKREEPCAQPPSGDDLYDILGVEFKNKLLNGKWNNLLGDEPCVKTQDMVKDASTFMS IREANSDLFSLTGGVSDSNMFSDLGTDHLLDAVVSKAHAAAKQSSDDNVSCRTTLTKISMPSFPGGSATYGRIGMCDQVQRELISLPKRAGTIASSSFRS GCSKDDVGTCSQTTSIYGSQLSSWVEQGHNAGHDCSVSTAFSKKNDETSKPNRKRLKAGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIK HMLFLQSVTKHADKLKQTGDSKLLNKESGLLLKENFEGGATWAFEVGSQSMVCPIIVEDLNPPRQMIVEMLCEERGFFLEIADLIRGLGLTILKGVMETR NDKIWARFAVEANRDVTRMEIFMSLVQLLEQTVKGSAPPVGALENGNTMVHHTFPQATSIPATGMPSSLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	0	1
AT5G60580			RING/U-box superfamily protein...		Potri.009G013300 [exp]	1.41	0.8430
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	4.47	0.8254	SDG906,SUVH3.3
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.015G089100 [exp]	6.24	0.7480
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G173901 [exp]	6.92	0.7765
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	9.16	0.7830
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	9.79	0.7841
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.005G207700 [exp]	10.09	0.7762
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.010G046100 [exp]	10.19	0.7953
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	11.09	0.8191
AT5G05130			DNA/RNA helicase protein (.1)		Potri.006G035700 [exp]	12.24	0.7568	CHR931

Compare expression of checked genes

Potri.001G216900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.