Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27240 446 / 2e-153 Aluminium activated malate transporter family protein (.1) AT1G08440 444 / 8e-153 Aluminium activated malate transporter family protein (.1) AT1G08430 428 / 2e-146 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT3G11680 410 / 2e-139 Aluminium activated malate transporter family protein (.1) AT4G00910 318 / 1e-103 Aluminium activated malate transporter family protein (.1) AT5G46610 283 / 2e-89 Aluminium activated malate transporter family protein (.1.2.3) AT4G17970 280 / 3e-88 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46600 275 / 2e-86 Aluminium activated malate transporter family protein (.1) AT1G18420 215 / 5e-63 Aluminium activated malate transporter family protein (.1) AT3G18440 214 / 2e-62 ATALMT9 aluminum-activated malate transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217400 [exp] 743 / 0 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 732 / 0 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 731 / 0 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 708 / 0 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 527 / 0 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 508 / 4e-178 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 467 / 4e-162 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 461 / 2e-159 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 345 / 8e-114 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021272 [exp] 452 / 6e-156 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 452 / 6e-156 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 428 / 4e-147 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 380 / 3e-128 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 308 / 1e-99 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 307 / 1e-99 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 289 / 7e-92 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 278 / 2e-87 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 268 / 7e-84 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013347 [exp] 256 / 5e-81 AT3G11680 232 / 6e-72 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.001G217200.1 pacid=42788935 polypeptide=Potri.001G217200.1.p locus=Potri.001G217200 ID=Potri.001G217200.1.v4.1 annot-version=v4.1 ATGGAAGTTGGGTCTGGAAGCGGTGACAAAGCTGGGTTTTTCACTCAAGGACGCTGGTGGCTCAAGGCCTTGCCTGCGAAGTTCAAAGCTAACATGGTTG CTATGGTTAGGAACATAAAGAAACTTGGACAAGATGATCCAAGAAGAGTTATTCATTCACTAAAAGTTGGACTAGCACTAACATTGGTATCAATGTTCTA CTACTGTCAGCCACTTTACAGTAATTTTGGTGTCACTGCAATGTGGGCTATCATGACTGTTGTTGTTGTCTTTGAATTCTCTGTGGGTGCTACTCTTGGA AAAGGATTGAATAGAGGAATGGCAACGCTAATGGCTGGTGGACTAGGTGTTGGAGCACATCACCTAGCAAACCTCTCTGGACATATTGGAGAACCCATAC TACTTGGGTTCTTTGTCTTTCTACAAGCTACAATATCAACATTTTTAAGGTTCTTTCCGAAAATTAAATCGAGATATGATTATGGGATGTTAATATTCAT ATTGACCTTCTCTTTGATATCGGTATCTGGTTATCGAGACGATGAAATATTAGAGTTCGCACATAAAAGATTATCAACCATCAGCATAGGTGGTTCTGCT TGTGTCATCATTTCTACTGTGGTTTGCCCTGTGTGGGCTGGTGAAGATCTTCACAATCTGATTGCTCTCAACATTGAAAAGCTTGGCAACTTCTTAGAAG GATTTGGTGATGAATACTTCAAAAGAACAGGGGGTGAAGAGAGCAAAGACGACAAGAAATTTTTGGAAGGATACAAAAGTGTTCTCAATTCAAAAAATAG TGAAGAATCCTTGGCTAATTTTGCTGCATGGGAGCCAGGTCATGGTCGGTTCCCATTTCGACATCCATGGAAACTATACCTGAAAGTTGGGACTCTGGCT CGAGAATGTGCCTACCGAATTGAAGCATTGAATGGATGCTTAAATGCTGACATTCAGGCATCATCAGAAGTTGGTAGCATAATTCAGGAAGCATGCACAA ATTTAAGCATAGAATCTGGAAAAGCACTAAAGGAACTTGCATTGGCAATCAAAATAATGGTGCAGGTGCAGCCATCTTCTGCAGATTCCCACATTGAAAA TGCAAAATCTGCTGCCAAAAACCTCAAATCTTTACTCAAATCAGGCATATGGGAAGACATTGACCTGCTGAAAGTTATACCAGGGGTTACAGTAGCTTCA ATACTTATTGATGTGGTCACATGCACTGAAAAAATTGCTGAATCCATACATGAACTTGCCTCCAAAGCCCAATTTAAGAGTGTAGAGCCAACTCTATCAA CAGAAAAGTTGCATTCAGGACAAATTCAGAGTGTAAAATCAGCTCAGATGGTCAATTGCTCCCATGTTGTCATCAATGTCGGTGAATCAACTCTGCCTTC CCCACCAAGTGAGACTTCTTCAGCACCAAACGCTAGCAAGCAAAGGATGGAAGTGTAA
AA sequence Show only first row Show all	>Potri.001G217200.1 pacid=42788935 polypeptide=Potri.001G217200.1.p locus=Potri.001G217200 ID=Potri.001G217200.1.v4.1 annot-version=v4.1 MEVGSGSGDKAGFFTQGRWWLKALPAKFKANMVAMVRNIKKLGQDDPRRVIHSLKVGLALTLVSMFYYCQPLYSNFGVTAMWAIMTVVVVFEFSVGATLG KGLNRGMATLMAGGLGVGAHHLANLSGHIGEPILLGFFVFLQATISTFLRFFPKIKSRYDYGMLIFILTFSLISVSGYRDDEILEFAHKRLSTISIGGSA CVIISTVVCPVWAGEDLHNLIALNIEKLGNFLEGFGDEYFKRTGGEESKDDKKFLEGYKSVLNSKNSEESLANFAAWEPGHGRFPFRHPWKLYLKVGTLA RECAYRIEALNGCLNADIQASSEVGSIIQEACTNLSIESGKALKELALAIKIMVQVQPSSADSHIENAKSAAKNLKSLLKSGIWEDIDLLKVIPGVTVAS ILIDVVTCTEKIAESIHELASKAQFKSVEPTLSTEKLHSGQIQSVKSAQMVNCSHVVINVGESTLPSPPSETSSAPNASKQRMEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27240			Aluminium activated malate tra...		Potri.001G217200 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	2.82	0.9729
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G084500 [exp]	3.00	0.9674
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.015G110700 [exp]	4.24	0.9692
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	4.47	0.9673
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.010G212600 [exp]	6.70	0.9658
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.008G157300 [exp]	6.92	0.9638
AT4G31980			unknown protein		Potri.013G146300 [exp]	7.74	0.9460
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	8.77	0.9549	Pt-ATML1.1
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	8.83	0.9446
AT5G04190		PKS4	phytochrome kinase substrate 4...		Potri.007G074056 [exp]	12.12	0.9231

Compare expression of checked genes

Potri.001G217200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.