Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08440 451 / 1e-155 Aluminium activated malate transporter family protein (.1) AT2G27240 449 / 1e-154 Aluminium activated malate transporter family protein (.1) AT1G08430 444 / 8e-153 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT3G11680 387 / 1e-130 Aluminium activated malate transporter family protein (.1) AT4G00910 301 / 7e-97 Aluminium activated malate transporter family protein (.1) AT4G17970 271 / 8e-85 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 270 / 2e-84 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 263 / 1e-81 Aluminium activated malate transporter family protein (.1) AT3G18440 223 / 3e-66 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 218 / 4e-64 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217300 [exp] 869 / 0 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 820 / 0 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 739 / 0 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 729 / 0 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 509 / 2e-178 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 493 / 4e-172 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 461 / 1e-159 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 452 / 3e-156 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 343 / 3e-113 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013577 [exp] 442 / 3e-152 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 439 / 1e-150 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 407 / 1e-138 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 359 / 4e-120 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 296 / 2e-95 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 296 / 1e-94 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 286 / 1e-90 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 281 / 8e-89 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 272 / 2e-85 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013347 [exp] 233 / 3e-72 AT3G11680 232 / 6e-72 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.001G217400.1 pacid=42789908 polypeptide=Potri.001G217400.1.p locus=Potri.001G217400 ID=Potri.001G217400.1.v4.1 annot-version=v4.1 ATGGAGGTTGCGTCTGGAAGCGGTGACAAAGCTGGGTTTTTCACTCAAGGACGCTCGTGGCTCAAGGCCTTGCCTGTGAAGTTCAAAGCTAACATGGTTG GTATGGCTTGGAATATAAAGAAGCTTGGACAAGAAGATCCAAGAAGAGTTGTTCATTCACTAAAAGTAGGATTAGCACTTACATTGGTATCAACACTCTA CTACTTAAGCCTGTCTAAGACTTTTGGTGTCGATGCCATATGGGCTGTTATGACTGTTGTCCTGGTCTTTGAATTCTCCGTGGGGGCTACTCTTGGAAAA GGATTGAATAGAGGAATGGCAACACTTCTGGCTGGTGGACTAAGTATTGGAGCCCATCACCTAGCAAAACTCACTGGACATATTGGACAACCTATACTAA TTCTGTTCCTTGTCTTTCTACAAGCTACTATATCAACATTTTTAAGGTTCTTTCCGAAAATTAAAGCAAGATATGATTATGGGATGTTAATATTCATTTT GACCTTCTCTATGATAACGGTATCTGGTTTTCGACAAGATCAAATATTAGAGTTAGCACATAAAAGATTATCAACCGTCAGCATAGGTGCTGCTGCTTGT GTCATCGTTTCTATTGTGGTTTTCCCTGTGTGGGCTGGTGAAGATCTTCACAATCTGATCGCTCTCAACATTGAAAAGCTTGGCAACTCCTTAGAAGGAT TTGGTGATGAATACTTCAAAAGAACAGGGGGTGAAGAGAGCAAAGACGACAAGAAATTTTTGGAAGGATACAAAAGTGTTCTCAATTCAAAAAATAGTGA AGAATCCTTGGCTAATTTTGCTGCATGGGAACCATGTCATGGTCGGTTCCCATTTCGACATCCATGGAAACTATACCTGAAAGTTGGGACTCTGGCTCGA GAATGTGCCTACCGAATTCAAGCATTGAATGGATGCTTAAATGCTGACATTCAGGCATCATCAGAAGTTAGTAACATAATTCAGGAAGCATGCACAAAAA TGAGCAGAGAATCTGGAAAATCACTTAAGGAACTTGCATTGGCAATCAAAATAATGGTGCAGCCATCTTCTGCAGATTCCCACATTGAAAATGCAAAATC TGCTGCCAAAAATATCAAATCTTTACTCAAATCAGGCATATGGGAAGACATTGACCTGCTGAAAGTTATACCAGGGGTTACAGTAGCTTCAATACTTATT GACGTGGTCACATACACTGAAAAAATTTCTGAATCCATATATGAACTCGCTTCCAAAGCCCAATTTAAGAGTGTAGAGCCAACTCTATCACCAAAAAAGT TGCATTCAGGACAAAATCAGAGTGTAAAATCAGCTCAGATAGTCAATTGCCCCGATGTTGGCATCAATGTCAGGGAATCAACTCTGCCTTCCCCACCAAG TGAGAATTCTTCAGCACCAAAGGCTAGCAAGCAAAGTATGGGAGTGCAAATATAG
AA sequence Show only first row Show all	>Potri.001G217400.1 pacid=42789908 polypeptide=Potri.001G217400.1.p locus=Potri.001G217400 ID=Potri.001G217400.1.v4.1 annot-version=v4.1 MEVASGSGDKAGFFTQGRSWLKALPVKFKANMVGMAWNIKKLGQEDPRRVVHSLKVGLALTLVSTLYYLSLSKTFGVDAIWAVMTVVLVFEFSVGATLGK GLNRGMATLLAGGLSIGAHHLAKLTGHIGQPILILFLVFLQATISTFLRFFPKIKARYDYGMLIFILTFSMITVSGFRQDQILELAHKRLSTVSIGAAAC VIVSIVVFPVWAGEDLHNLIALNIEKLGNSLEGFGDEYFKRTGGEESKDDKKFLEGYKSVLNSKNSEESLANFAAWEPCHGRFPFRHPWKLYLKVGTLAR ECAYRIQALNGCLNADIQASSEVSNIIQEACTKMSRESGKSLKELALAIKIMVQPSSADSHIENAKSAAKNIKSLLKSGIWEDIDLLKVIPGVTVASILI DVVTYTEKISESIYELASKAQFKSVEPTLSPKKLHSGQNQSVKSAQIVNCPDVGINVRESTLPSPPSENSSAPKASKQSMGVQI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08440			Aluminium activated malate tra...		Potri.001G217400 [exp]	0	1
AT1G08440			Aluminium activated malate tra...		Potri.001G217300 [exp]	2.64	0.9224
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196900 [exp]	5.74	0.9021
					Potri.004G021901 [exp]	7.34	0.8536
					Potri.005G189000 [exp]	7.34	0.9041
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177600 [exp]	8.94	0.8522
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143133 [exp]	9.48	0.8884
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	13.11	0.8273
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.005G211300 [exp]	13.96	0.8549
					Potri.002G177700 [exp]	15.42	0.8834
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G064100 [exp]	18.54	0.8723

Compare expression of checked genes

Potri.001G217400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.