Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05750 547 / 0 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 337 / 1e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 330 / 4e-107 MEF21 mitochondrial editing factor 21 (.1) AT3G15930 330 / 2e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 322 / 3e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 331 / 5e-104 unknown protein AT2G29760 327 / 2e-103 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 323 / 2e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 320 / 3e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 314 / 2e-99 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031600 [exp] 367 / 8e-119 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 356 / 4e-116 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 352 / 5e-116 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 356 / 6e-116 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 349 / 3e-114 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.009G044700 [exp] 346 / 7e-111 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 341 / 3e-110 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 340 / 2e-109 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G019500 [exp] 339 / 7e-109 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013341 [exp] 535 / 0 AT1G05750 525 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 358 / 3e-118 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 345 / 2e-113 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 343 / 1e-109 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 341 / 1e-109 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 342 / 3e-109 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 330 / 2e-105 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 329 / 2e-105 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 328 / 4e-105 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 325 / 3e-104 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G217600.1 pacid=42788097 polypeptide=Potri.001G217600.1.p locus=Potri.001G217600 ID=Potri.001G217600.1.v4.1 annot-version=v4.1 ATGACAGCGCTTCCCGCCCTCATATCCACCACGACCAACACAACAACCACCACTCTTCCTCATCATCCCAACACCATACAACCACCGCACACTACCCGTC ATCAAGACCAAACCCGACCCATTAACCGCGACTCGAAAAAACCCAATCTTTCCCTCAAACAAATATCTAATAAAACCTCAATAGACCCCGTTGTTTCATG GACCTCTTCACTTTCCCGTTATTGCCGCAACGGGCAGTTGCACCAAGCCGCCTCTCACTTCACTCAAATGCGTCTCTTAGAAATCGACCCCAATCATGTC ACGTTCATTACTCTTCTCTCCGGCTGTGCAGATCTTCCATCACAAGGAAACTCTCTTGGCCCTTTACTTCATGCTTACACGCGAAAACTGGGCTTGGATA CGTGTAATTTGATGGTGGGTACAGCGCTTGTTGATATGTACGCTAAGTGTGGTCATGTGGAATTGTCTAGGTTGTGTTTTGATGAGCTAAAAGTGAAGAA TTCGTTTTCTTGGAATACGATGATTGATGGGTTCGTGAGGAATGGGAAGATAAGGGAGGCGATTGAGGTGTTCGATGAAATGCCTGAGAGAGGTGTGATA TCTTGGACTGTGTTGATTAATGGGTTTGTTAAAATGGGTCTTTTTGAGGAAGCTCTTGAGTGGTTTAGAAAAATGCAGGTATCTAAAGTAGAGCCTGATC GCGTGACCATTGTTACAGTTCTGTCCGCGTGTGCCAATTTGGGAGCACTGGGTTTAGGCTTGTGGGTGCATCGATATGCTTTGAAAAAGGGGTTAAGGGA CAATGTTAAGATATGTAATTCTCTGATTGATTTGTATTCTCGATGCGGGGCCATCGAATTAGCTCGTCAAGTGTTTGAGAAAATGGGTGAGAGAACTTTG GTTTCTTGGAATTCGATTATTGGGGGTTTAGCTGCTAATGGGTTTACCGAGGAAGCTTTGGAGCATTTTGATTTGATGCAGAAACAAGGGTTCAAGCCAA ATGATGTCAGTTTCACTGGAGCACTCACTGCTTGCAGCCATACTGGTTTGGTTGATGAAGGGCTGAAATACTTTGATATCATGGAGAGAGTGCACAAAAT TTCTCCTAGAATTGAGCATTATGGGTGCATAGTTGATCTTTACAGCCGAGCAGGGAGATTAGAAGATGCAATGAGTGTAGTACAAAATATGCCAATGAAG CCAAATGAAGTTGTTGTAGGGTCATTATTGGCTGCTTGTAGGACTCGTGGGGATGTTGAATTAGCTGAAAGGTTAATGAACTATCTTGTCCATTTGGATC CTGGAGCCGATTCAAATTATGTATTACTCTCCAATATATATGCAGCAGTTGGAAGGTGGGATGGTGCATGCAAGCAGAGAATGACAATGAAAGCTCTTGG TATACAGAAGAAGCCAGGATTTAGTTCAATTGAGATTGGATGTGACATTCACGAGTTTGTGGCTGGTGATAAATCTCATGATAAAGCAGAGGATATATAT TCGATGTTGGAGCTTCTGTCTTTTGATCAAGCATTGTGTGGTTATGTTCCTGAAGCCATGGCTAAGGATATGCTAGGAAATGGCTGA
AA sequence Show only first row Show all	>Potri.001G217600.1 pacid=42788097 polypeptide=Potri.001G217600.1.p locus=Potri.001G217600 ID=Potri.001G217600.1.v4.1 annot-version=v4.1 MTALPALISTTTNTTTTTLPHHPNTIQPPHTTRHQDQTRPINRDSKKPNLSLKQISNKTSIDPVVSWTSSLSRYCRNGQLHQAASHFTQMRLLEIDPNHV TFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVI SWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTL VSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMK PNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVGRWDGACKQRMTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIY SMLELLSFDQALCGYVPEAMAKDMLGNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	0	1
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	1.00	0.9578	CRR2.1
AT1G77405			Pentatricopeptide repeat (PPR)...		Potri.002G080300 [exp]	1.73	0.9496
AT5G63290			Radical SAM superfamily protei...		Potri.012G092900 [exp]	2.44	0.9545
AT1G80550			Pentatricopeptide repeat (PPR)...		Potri.005G147200 [exp]	4.69	0.9278
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	5.91	0.9346
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	5.91	0.9383
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	6.00	0.9434
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	6.70	0.9188
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	7.48	0.9308
AT5G15300			Pentatricopeptide repeat (PPR)...		Potri.017G086100 [exp]	7.93	0.9290

Compare expression of checked genes

Potri.001G217600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.