Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 724 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 707 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 482 / 2e-155 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 452 / 3e-144 Leucine-rich repeat protein kinase family protein (.1) AT2G17220 238 / 1e-69 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT3G58690 235 / 8e-69 Protein kinase superfamily protein (.1) AT1G68690 241 / 7e-68 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G76370 232 / 7e-68 Protein kinase superfamily protein (.1) AT2G20300 238 / 1e-66 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT1G23540 237 / 2e-66 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020400 [exp] 1439 / 0 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 1125 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.010G103000 [exp] 728 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 662 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 520 / 1e-169 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 520 / 1e-169 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 504 / 7e-164 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 498 / 2e-161 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 480 / 1e-154 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021275 [exp] 1058 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 1036 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10013342 [exp] 968 / 0 AT2G01820 685 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10001851 [exp] 961 / 0 AT2G01820 693 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039038 [exp] 737 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 733 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 691 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 655 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 650 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 480 / 2e-154 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G217700.1 pacid=42792270 polypeptide=Potri.001G217700.1.p locus=Potri.001G217700 ID=Potri.001G217700.1.v4.1 annot-version=v4.1 ATGAAGCTTTGCAACCTGTTGTTTTTGTTGTTGTTGTTGGGTTGTGTCACATTGGGGTATAGTGTTACAGATCCTAATGACCTTAAGATCTTGTTAGATT TCCAGAAGGGGTTGGAGAATCCAGAGCTTCTCAAATGGCCTGCCAATGGTGATGATCCTTGTGGCCCTCCTTTATGGCCTCATGTTTTTTGTTCTGATGG CAGAGTCACACAAATTCAGGTCCAAAGTATGGGTCTTAAAGGACCCCTCCCGCAAAATTTTAACCAGCTCTCAAAGCTTTACAATATAGGCCTCCAGAGA AACAATTTCACTGGAAAACTCCCCACCTTTAAAGGATTATCTGAATTAGAATTTGCTTTCTTGGATTACAATAATTTTGATACAATCCCGTCTGATTTCT TTGTTGGACTTAGTAGCATAAGGGTTTTGGCTTTGGATAGCAATCCTTTGAATGAGAGTACTGGATGGTCTCTTCCCAGTGAGTTAGCAGATTCTGTTCA GTTAACAAATCTTTCAGTGTCTTCAAGCAATTTGGCTGGTTCATTGCCTGATTTTCTAGGCAGCATGCAATCTCTTAGTAATCTAAGACTTTCTTATAAT AGATTATCTGGTGAAATTCCTGCGAGTTTTGGGAAGTCTTTGATGTCTACTCTGCTGTTGAATAATCAAGAAGGAGGTGGCATGAGTGGTCCGATTGATG TTATTGCAAGCATGACATCACTGTCCCAACTATGGCTTCATGGGAATTCTTTCACTGGAACAATACCTGAGAACATTGGGGGTTTGTCTTTGTTGAGAGA TCTTAATCTCAACGGGAATAAGCTTGTTGGTTTGGTTCCTCAGAGCTTGGCAGATATGCCGCTGGATGATTTGGACTTGAACAATAATCAACTGATGGGT CCAGTGCCGAAGTTCAAGGCTGGTAAGGTTTCTTATGAATCCAATCCTTTTTGTCAATCTAAACCTGGTGTGGAATGTGCCCCAGAAGTTAATGCCCTTT TGGACTTTCTTGGTGGTGTGAATTATCCTTCAATCCTTACTTCTCAGTGGTCTGGTAATGATCCATGTCAAGGATCGTGGTTGGGATTGAATTGTGATTC TAATTCAAAGGTTTCTGTCATAAATCTGCTTAGGCATAATCTTACTGGCACTCTTAGTCCATCAATTGCAAGATTAGATTCACTGATTGAAATTGATCTT GGAGGAAACAGTATAAAGGGCACAATTCCTAGCAATTTCACGAATTTGAACTCTTTGAGATTGTTGGATGTTAGTGGAAACAACCTTGGTCCTCCATTGC CCAAGTTTCGGACTAGTGTGAAGCTTGTTGTTGATGGAAATCCTCTTCTGGATGGTGGGAATCAGACGCACCAACCCCCCTCCTCTGCTAGCAGCCCTCC TACAGGGAGTTTTACTCCACCAGAGAATCCTCCACGAGGCAGTGCACCGCCTTCGCCATCCACTATGCCTTTCAGTCCACCTTCTCCAACATCAATCTCA AACACAAATCAAAGAACCAAACTGGTAATTGTGGGTGGAATTTTTGCCGGTTCATTGTTGGCTATCGTGTTGATTGCTTTGTCTCTATATTGTTGCTTTA AGAAGAGAAAAGAGACCTCAAATCCTCCTAGTTCCATTGTGGTTCATCCTAGAGATCCGTCTGATCGAGAAAATATTGTTAAGATTGCATTTTCCAATAA CACCATCAGAAGCTTGTCCACTCAAACTGGAATTAGTTCTGTCAGTAATACCAGTAATCTGACAGAAAATTCTTCTTTGGTTGAGTCTGGAAATGTGGTT ATATCTGTCCAAGTTCTTCGCAAGGTGACAGATAACTTTGCCCAAAAGAATCAGCTTGGCTCTGGTGGATTTGGGATTGTCTACAAGGGTGAATTGGAAG ATGGGACTAAAATAGCTGTCAAGAGAATGGAGGCCGGGGTGATGGGCAGTAAAGCTGGGGATGAGTTTCAGGCTGAGATTGCCGTTCTTTCTAAAGTTCG GCATCGACATCTGGTTTCTCTCCTAGGGTATTCTATTGAAGGCAACGAGAGACTTCTTGTTTATGAATACATGCCTCAAGGTGCTTTAAGTATGCATCTT TTTCATTGGAAGAAACTGAACTTGGAACCTCTATCTTGGATGAGAAGATTGAGCATTGCACTGGATGTTGCGAGGGGGGTGGAATATCTTCATAGTTTGG CTCGACAGACATTTATTCACCGAGATCTCAAATCATCTAACATTCTTCTAGGTGATGATTTTCACGCAAAGGTTTCTGATTTCGGGCTGGTGAAACTTGC TCCGGACAGAGAACAGTCTGTTGCGACAAGACTAGCTGGAACCTTTGGTTACCTTGCACCTGAATATGCTGTTATGGGGAAGATAACGACTAAAGTTGAT GTGTTCAGTTATGGAGTGGTATTGATGGAACTTTTGACCGGGTTAACAGCCCTCGATGAGGAGCGCCCTGAGGAAAGCCGATACTTGGCTGAGTGGTTTT GGCGAATCAAGTCAAGCAAAGAGAAGCTTATGGCTGCCATTGACCCAGCTCTTAACGTCAATGACGAGACTTTTGAGAGCATCTCCAGCATAGCTGAATT GGCTGGGCATTGCACTTCAAGGGATCCAAACCACCGGCCTGATATGGGTCATGCAGTGAATGTGTTGGTGCCACTTGTTGAGAAATGGAAACCAGTTAAT GACGAATCCGAGGACTTCTATGGCATTGACTACAGCCAGCCACTTCCCGAGATGTTAAAAGTTTGGCAGGATGCTGACAGCACTGGGCTAAGTTATACCA GTCTTAGTGACAGCAAGGGTAGTATTCCAGCCAGACCAGCTGGTTTTGCCGAGTCCTTCACATCAGCTGATGGTCGTTAG
AA sequence Show only first row Show all	>Potri.001G217700.1 pacid=42792270 polypeptide=Potri.001G217700.1.p locus=Potri.001G217700 ID=Potri.001G217700.1.v4.1 annot-version=v4.1 MKLCNLLFLLLLLGCVTLGYSVTDPNDLKILLDFQKGLENPELLKWPANGDDPCGPPLWPHVFCSDGRVTQIQVQSMGLKGPLPQNFNQLSKLYNIGLQR NNFTGKLPTFKGLSELEFAFLDYNNFDTIPSDFFVGLSSIRVLALDSNPLNESTGWSLPSELADSVQLTNLSVSSSNLAGSLPDFLGSMQSLSNLRLSYN RLSGEIPASFGKSLMSTLLLNNQEGGGMSGPIDVIASMTSLSQLWLHGNSFTGTIPENIGGLSLLRDLNLNGNKLVGLVPQSLADMPLDDLDLNNNQLMG PVPKFKAGKVSYESNPFCQSKPGVECAPEVNALLDFLGGVNYPSILTSQWSGNDPCQGSWLGLNCDSNSKVSVINLLRHNLTGTLSPSIARLDSLIEIDL GGNSIKGTIPSNFTNLNSLRLLDVSGNNLGPPLPKFRTSVKLVVDGNPLLDGGNQTHQPPSSASSPPTGSFTPPENPPRGSAPPSPSTMPFSPPSPTSIS NTNQRTKLVIVGGIFAGSLLAIVLIALSLYCCFKKRKETSNPPSSIVVHPRDPSDRENIVKIAFSNNTIRSLSTQTGISSVSNTSNLTENSSLVESGNVV ISVQVLRKVTDNFAQKNQLGSGGFGIVYKGELEDGTKIAVKRMEAGVMGSKAGDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPQGALSMHL FHWKKLNLEPLSWMRRLSIALDVARGVEYLHSLARQTFIHRDLKSSNILLGDDFHAKVSDFGLVKLAPDREQSVATRLAGTFGYLAPEYAVMGKITTKVD VFSYGVVLMELLTGLTALDEERPEESRYLAEWFWRIKSSKEKLMAAIDPALNVNDETFESISSIAELAGHCTSRDPNHRPDMGHAVNVLVPLVEKWKPVN DESEDFYGIDYSQPLPEMLKVWQDADSTGLSYTSLSDSKGSIPARPAGFAESFTSADGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	0	1
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	5.91	0.8374
AT3G62110			Pectin lyase-like superfamily ...		Potri.014G112100 [exp]	6.00	0.8379
AT2G05920			Subtilase family protein (.1)		Potri.006G141200 [exp]	6.92	0.8178
AT1G11125			unknown protein		Potri.011G045700 [exp]	8.12	0.8413
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.018G044900 [exp]	9.05	0.7883
AT1G38131			O-fucosyltransferase family pr...		Potri.005G173500 [exp]	9.79	0.8010
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	10.24	0.8574
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	16.24	0.8389
AT4G31890			ARM repeat superfamily protein...		Potri.006G263100 [exp]	16.30	0.8140
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G133400 [exp]	18.70	0.8228

Compare expression of checked genes

Potri.001G217700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.