Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44190 535 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 506 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G08740 59 / 2e-09 NDC1 NAD(P)H dehydrogenase C1 (.1) AT4G28220 59 / 3e-09 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G05020 47 / 2e-05 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT3G24170 43 / 0.0002 ATGR1 glutathione-disulfide reductase (.1.2.3) AT4G21490 41 / 0.001 NDB3 NAD(P)H dehydrogenase B3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147200 [exp] 53 / 2e-07 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G034100 [exp] 44 / 0.0002 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001856 [exp] 538 / 0 AT3G44190 506 / 1e-180 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10013339 [exp] 532 / 0 AT3G44190 497 / 6e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10008365 [exp] 230 / 2e-73 AT3G44190 305 / 9e-103 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10004789 [exp] 142 / 4e-41 AT3G44190 140 / 4e-41 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10018541 [exp] 64 / 7e-11 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039769 [exp] 62 / 2e-10 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10032131 [exp] 62 / 3e-10 AT5G08740 610 / 0.0 NAD(P)H dehydrogenase C1 (.1) Lus10014555 [exp] 61 / 4e-10 AT5G08740 647 / 0.0 NAD(P)H dehydrogenase C1 (.1) Lus10018540 [exp] 54 / 1e-07 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039768 [exp] 51 / 7e-07 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07992 [poplar] [flax] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.001G217800.3 pacid=42792367 polypeptide=Potri.001G217800.3.p locus=Potri.001G217800 ID=Potri.001G217800.3.v4.1 annot-version=v4.1 ATGGAAGAAATGGGTTCAGAGAAGAGGAGGTTGGTGGTGATTGGAGGAGGTATTGCTGGTTCCTTGCTTGCCAAATCTCTCCAATTTCATGCTGATGTCA CCTTTATTGACCCGAAGGAGTATTTTGAGATCACATGGGCAAACTTGAGAACAATGGTGGAGCCATCATTTGGGGAGAGATCAGTGATCAATCACAGAGA TTACTACACGAATGGCCGTATTGTTACATCTACTGCAATTGGCATTACTGAAACGGAAGTGTTGACAGCAGATGACTTTTCCATTCCCTATGACTATCTT GTCATTGCCACAGGCCACAGGGATCCTGTCCCGAAAACTAGGATGGAAAGACTTAAGGAATACCAAGCAGAAAATGAAAAGATTAAGTCTGCTCAGTCTG TTTTGATTGTTGGAGGGGGTCCTACTGGTGTTGAGCTTGCTGGAGAGATTTCTGTTGATTTCCCAGAAAAACATGTTACCCTGGTGCATAGTGGCTCAAG GTTGCTGGAATTTATTGGCCCAAAAGCTTCTGACAAGACACTGCAATGGTTGACATCGAAGAGAGTTGATGTGAAATTGGAGCAGAGAGTTGATTTGAAC TCTGTTACAGATAGTAATGGTAGCAAAATATATCACACCACAGCTGGAGAAAGTATCAGAGCAGATTGCCATTTCCTATGCACCGGGAAACCACTGGGTT CAGGATGGCTTGAGGGCACTATTTTGAACAGTAACTTGGATAGTCGGGGAAGGTTGATGGTTGATGAGTATTTGAGGGTCAAAGGTCGAAAAAATATATT CGCAATTGGAGATATTACTGATGTTCCAGAAATCAAACAAGGGTACTTGGCGCAAAAACATGCTTTGGTGGCAGCTGCGAATCTGAAGCTATTGATGTCT GGAGGCAAAGAACGAAAGATGTCCTCTTATAAACCAGGTTCAACTACGGCAATTGTTTCGCTGGGCAGAAGGGATGCTGTAGCACAATTTCCATACACAA CCCTCATTGGCATTGTTCCTGGTATGATCAAATCCAGAGACTTGTTTGTGGGGAAAACAAGGAAGCAAAGGGGTCTACAACCTCATTAA
AA sequence Show only first row Show all	>Potri.001G217800.3 pacid=42792367 polypeptide=Potri.001G217800.3.p locus=Potri.001G217800 ID=Potri.001G217800.3.v4.1 annot-version=v4.1 MEEMGSEKRRLVVIGGGIAGSLLAKSLQFHADVTFIDPKEYFEITWANLRTMVEPSFGERSVINHRDYYTNGRIVTSTAIGITETEVLTADDFSIPYDYL VIATGHRDPVPKTRMERLKEYQAENEKIKSAQSVLIVGGGPTGVELAGEISVDFPEKHVTLVHSGSRLLEFIGPKASDKTLQWLTSKRVDVKLEQRVDLN SVTDSNGSKIYHTTAGESIRADCHFLCTGKPLGSGWLEGTILNSNLDSRGRLMVDEYLRVKGRKNIFAIGDITDVPEIKQGYLAQKHALVAAANLKLLMS GGKERKMSSYKPGSTTAIVSLGRRDAVAQFPYTTLIGIVPGMIKSRDLFVGKTRKQRGLQPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Potri.001G217800 [exp]	0	1
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	4.58	0.8584
AT4G29960			unknown protein		Potri.018G143000 [exp]	4.89	0.8534
AT3G53580			diaminopimelate epimerase fami...		Potri.016G120900 [exp]	4.89	0.8728
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.001G062800 [exp]	6.48	0.8588
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	7.21	0.8705
AT4G00530			unknown protein		Potri.014G082800 [exp]	7.41	0.8632
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.004G112800 [exp]	9.16	0.8946	Pt-NEMDH.2
AT2G26970			Polynucleotidyl transferase, r...		Potri.001G222300 [exp]	10.00	0.8367
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	10.81	0.8553
AT1G31220			Formyl transferase (.1)		Potri.012G107500 [exp]	14.76	0.8749

Compare expression of checked genes

Potri.001G217800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.