Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44200 895 / 0 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 440 / 9e-146 ATNEK5 NIMA-related kinase 5 (.1) AT1G54510 440 / 3e-143 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G04810 439 / 4e-143 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 437 / 1e-142 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 424 / 6e-138 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G12200 315 / 2e-96 ATNEK7 NIMA-related kinase 7 (.1.2) AT5G18700 147 / 1e-35 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT1G53570 143 / 2e-35 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT3G61960 140 / 1e-34 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020100 [exp] 1479 / 0 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.006G056300 [exp] 450 / 2e-146 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 448 / 9e-146 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.005G051600 [exp] 443 / 1e-143 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 440 / 3e-143 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.002G049400 [exp] 439 / 8e-143 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.001G018700 [exp] 434 / 2e-141 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 429 / 2e-139 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 143 / 2e-34 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001857 [exp] 947 / 0 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 947 / 0 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 442 / 4e-144 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 441 / 9e-144 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 441 / 2e-143 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10040499 [exp] 437 / 1e-141 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 427 / 5e-134 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10015928 [exp] 409 / 4e-131 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 408 / 5e-131 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10031834 [exp] 387 / 6e-125 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G218100.3 pacid=42788332 polypeptide=Potri.001G218100.3.p locus=Potri.001G218100 ID=Potri.001G218100.3.v4.1 annot-version=v4.1 ATGGAGTCTCGAATGGATCAGTATGAGATCATGGAGCAGATCGGCCGGGGTGCTTTTGGTGCTGCTATTCTTGTGAATCACAAATCCGAGAAAAAGAAGT ATGTGTTGAAGAAGATCAGGCTTGCAAGGCAAACCGAGAGATGCCGGAGATCTGCTCACCAAGAAATGGCGTTGATTGCGAGAATTCAGCATCCGTACAT TGTAGAATTTAAAGAAGCATGGGTTGAGAAGGGTTGCTATGTTTGTATTGTTACGGGATATTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCG AATGGCGTGTATTTTCCTGAAGAAAAACTCTGCAAGTGGTTCACTCAACTACTGTTAGCGGTGGAATATTTGCATGGCAATTTTGTTCTACATCGGGACC TCAAATGTTCCAACATATTTCTTACTAAAGAACAGGATGTTCGCCTTGGGGATTTTGGACTTGCTAAGACTCTGAAAGCAGATGACTTGGCTTCCTCGGT GGTTGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGTTTCAAATCAGATATTTGGTCCTTGGGGTGCTGTATGTATGAGATG GCTGCTCGTCGCCCTGCCTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAATCGTTCCTCTATTGGCCCTTTACCGCCTTGCTATTCTCCAT CTTTGAAAACACTCATTAAAGGCATGCTGAGAAAGAATCCTGAGCATCGTCCTAGTGCATCCGAGATCTTGAAGCACCCATACCTGCAGCCTTATGTTGA TCAATACCGTCCATCGTTCAGTCCTCCAACATCCTTATCTTCTGAGAAACGTCTTCCTAGAAGTCGTGAATCTCGAAGAAGTATGGCTGAAAGCCAGAAC AGTAATAGTTCTAGTAGTGATAAGGATAGTTTGCTTTCAAGTGAACGAAATATCCCAGCAATGGTCTCAAATTGTGACAATAAAGCCACCGATACAGATT TAGCTTCTTTTGATGATGAAGATGGCGCTGAACAGCCCATGCCATGTGAAGAAGAAAACAATCTCAATGTTCGCATTGTCAAAATGAATGAACAGAGGGT GATGAAGCCTTGTCATGATGAAATTGGATGCAATGTTGAACCAAAGCAACCAAAAACTATCAAAAGTATTATGATGGCCTTAAAAGAAGGAAAACCTAGA GAAAATGGTTCCCCAATGAGAGGAAATCGTACAAAGACTGGAAGTGCATCAACCCAAAGAAGTAACATAGAAGCATCACCGAAAGTTCTTAGACCTAATG CCCTTGCTTCTGGTTTAAAGTTTAATGCAGATACACCAACTGTTGCACCTGCAAAAGCAGCCTTGGATTCTGCAAAGCGGATCCAGGGATCACATCCTAT GAAACACCAGTTACCTATAATTGAGTCCTCACCAAAGACTAAACCCAGATATGATGGGATTCCTCCAGCTGGTCCAAGTAAACATGTTGATGATGGACTT GCTGTGAAGCCAAGGCAAAGAACCCCTCCTAATCTGTTCCAGCGATCTTCATTTCCTGGAAGGACAACACAAATAGGAGCTGGTGTTCCAAATGGAAACA TGAAGTTGTGTCCAACTGAGACAAGCGAAGAACCTGAAAGTACTTCTTACCAAGTACCTGATGGTCGCCCATACTCCTCCGAGGAGGTATCACCAGAGTC TCAAAGGGCTCTAGTTGGAGCTTGCAAAGGAATGCAGACAGAAAGCAGTAATTCTGTCTCATCTTCAGTGTCAATTCAAGCTTTTGAGCTTTGTGATGAT GCAACAAATCCGTTTGTTGCCATGCCTGAACAGACACCTCCTAATCATGAGGCAGTGATCTGCACAGAAAACTTGGAACATTATCCACCCAGCTGTTCTC CTGCTACGACTTCATTTTCTGGCATGTCTGAAAATTTGTCCGGGCAAAACAGTGAATGTGGTCATAAATCCATACTATACTCAGTGGAAGCCTCGAATGT TGTCATAGATCTTCACAAGAAAACCATTGTTGGTGATGGGAGAGAGGTTGAAAGTTGTGCTCTGAATCCGACTGCCCCAAGTTCGGAAGAAATATTTATT TGTGAAAATAATACCCAATTAAGCAGGCTAAGTGCTATCCCTGAGACGGTGCCCCAATCAAATCTTATATCTGCATCTGGTGGTGATGACAAGTTCACAG TAAGAGAACTTCTATCATCAGTTTCAGAAACCACCACTTCCATTACCTCACCAATTTCAACTGGCCAAAAGAATATGCAGCCAGAAAAAGCTATGATTTT ACAAAATTCAACCACTGAGAAGCCTGCTGCTGCCCATCTGTCTCCTGCTTTTGACGATGTAATACATGTTATACGGCACAGTAGTTTTCGGGTTGGGAAT GAGCAGCCAGTTATGGAAACTGTGGAGATGGGGGTTCAAAATGTGGATGTTGGAAAGCTATTAAATGTAGTAAGAGATGAATTGGAGATGAGAAATGTGA GTACAGCAGTGACTCTTAAATCATCAAATTGCTCTGAAGCAGTGAGTTTGAAATCAAGTATTTCTGATCAATCCGGCACTAAAGAAATCGATTTGAGAAA TGAAATTGCATCAGTTCCACAATCTGATATTTCTGAGCTACCAAAACCCAACTCCTCTATTAGTGAAGAGGAAGCACCGGCAAAGGAAACTTTGGATGTT AAGTCTTTTAGGCAGAGGGCAGACGCACTAGAAGGACTTCTAGAACTGTCTGCCGAGTTGCTTCAGCAAAGCAGATTAGAAGAGCTTGCAGTTGTTTTGA AACCTTTTGGGAAAGATAAAGTCTCTCCAAGGGAGACAGCTATCTGGTTAGCAAAGAGCCTGAAAGGAATGATGATCGAGGAAAGCGGACGGAGTTCATG A
AA sequence Show only first row Show all	>Potri.001G218100.3 pacid=42788332 polypeptide=Potri.001G218100.3.p locus=Potri.001G218100 ID=Potri.001G218100.3.v4.1 annot-version=v4.1 MESRMDQYEIMEQIGRGAFGAAILVNHKSEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKS NGVYFPEEKLCKWFTQLLLAVEYLHGNFVLHRDLKCSNIFLTKEQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCMYEM AARRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPSASEILKHPYLQPYVDQYRPSFSPPTSLSSEKRLPRSRESRRSMAESQN SNSSSSDKDSLLSSERNIPAMVSNCDNKATDTDLASFDDEDGAEQPMPCEEENNLNVRIVKMNEQRVMKPCHDEIGCNVEPKQPKTIKSIMMALKEGKPR ENGSPMRGNRTKTGSASTQRSNIEASPKVLRPNALASGLKFNADTPTVAPAKAALDSAKRIQGSHPMKHQLPIIESSPKTKPRYDGIPPAGPSKHVDDGL AVKPRQRTPPNLFQRSSFPGRTTQIGAGVPNGNMKLCPTETSEEPESTSYQVPDGRPYSSEEVSPESQRALVGACKGMQTESSNSVSSSVSIQAFELCDD ATNPFVAMPEQTPPNHEAVICTENLEHYPPSCSPATTSFSGMSENLSGQNSECGHKSILYSVEASNVVIDLHKKTIVGDGREVESCALNPTAPSSEEIFI CENNTQLSRLSAIPETVPQSNLISASGGDDKFTVRELLSSVSETTTSITSPISTGQKNMQPEKAMILQNSTTEKPAAAHLSPAFDDVIHVIRHSSFRVGN EQPVMETVEMGVQNVDVGKLLNVVRDELEMRNVSTAVTLKSSNCSEAVSLKSSISDQSGTKEIDLRNEIASVPQSDISELPKPNSSISEEEAPAKETLDV KSFRQRADALEGLLELSAELLQQSRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGMMIEESGRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.001G218100 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	1.41	0.9118
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	2.44	0.9007
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	6.70	0.8983
AT5G19080			RING/U-box superfamily protein...		Potri.008G202700 [exp]	7.61	0.8353
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	10.24	0.8866
AT5G51150			Mitochondrial import inner mem...		Potri.012G113700 [exp]	13.19	0.8213
AT2G45540			WD-40 repeat family protein / ...		Potri.002G150000 [exp]	14.00	0.8663
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	14.69	0.8772	Pt-SPIKE1.3
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	14.89	0.8484
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	16.00	0.8926

Compare expression of checked genes

Potri.001G218100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.