Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G019900 [exp] 307 / 9e-107 ND / Potri.009G019800 [exp] 49 / 6e-07 AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 47 / 3e-06 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 42 / 0.0002 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 41 / 0.0004 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000324 [exp] 123 / 3e-34 AT2G35980 47 / 5e-06 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013331 [exp] 104 / 2e-27 ND / Lus10021286 [exp] 40 / 0.0009 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.001G218201.1 pacid=42791196 polypeptide=Potri.001G218201.1.p locus=Potri.001G218201 ID=Potri.001G218201.1.v4.1 annot-version=v4.1 ATGTCTCAACCAACCACCACCACCACCACCACCAAAATCCCCAAACTTTACTCAACAAAAGCCAAAGTATACGACTGCATCGTATTCTTTCTCTTCATCA CAGTATCATTCATACTAGTTGTTTCCGTTCCAGTCATAACTCGTGGCGTCATCTTTCTTCAGCCTGAAAGCCCCCAATTCAATGTCAGCTCCTCCTCCCT AACAATCCTCAATGTCTCCTCTAACGCCATAACCGCAAACTTCAACGTTACCTTCTCCACGAAAAACCCAAATAGGAAAACCATGTCTTATGAAAAAGTC GTTGCCTTGTTGCTTTATGGGAATGAAAGTCTCTCAACCATTACTCTTCCACCGTTTCACCAACCTGGGAAAACCCAGAAAACATTACAGGCTGCGTTTC CTAGCTTGTTTTTTCAGGTTAAAGATAACTCATCTTCTAGAGGTGCAGCTGTGAGTTTGACAACGGAGTTGCATGCCAAGGCAAAGTATGGAGGGTGGAC GTGGCCTGTCGAGAAGGATTTGATCAAGGCAGCGTGTGATGATGACGTGAAGGTTGAATTTCCTTCCAATGTGACAACGTTGGTGTTTGGTTCCAGTGAG TGTGATGTCAATGGGCAGTGGAAAAGAATTGTGACCAGATGCAGCAGAATATTTAGGAATTACATCTATGTTGTGTCAATTGTTTTGTTCATCCTGTTTG TTTCACTCTAG
AA sequence Show only first row Show all	>Potri.001G218201.1 pacid=42791196 polypeptide=Potri.001G218201.1.p locus=Potri.001G218201 ID=Potri.001G218201.1.v4.1 annot-version=v4.1 MSQPTTTTTTTKIPKLYSTKAKVYDCIVFFLFITVSFILVVSVPVITRGVIFLQPESPQFNVSSSSLTILNVSSNAITANFNVTFSTKNPNRKTMSYEKV VALLLYGNESLSTITLPPFHQPGKTQKTLQAAFPSLFFQVKDNSSSRGAAVSLTTELHAKAKYGGWTWPVEKDLIKAACDDDVKVEFPSNVTTLVFGSSE CDVNGQWKRIVTRCSRIFRNYIYVVSIVLFILFVSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G218201 [exp]	0	1
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	2.44	0.8312
AT2G04032		ZIP7	zinc transporter 7 precursor (...		Potri.010G134300 [exp]	5.74	0.8043	Pt-ZIP7.2
					Potri.002G048450 [exp]	7.07	0.8460
					Potri.011G041124 [exp]	7.48	0.8091
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	9.89	0.8203	SAP.1
AT3G21680			unknown protein		Potri.014G153200 [exp]	10.77	0.7738
AT5G57510			unknown protein		Potri.018G006800 [exp]	13.11	0.7557
AT1G20140		ASK4	SKP1-like 4 (.1)		Potri.009G135800 [exp]	18.84	0.8271	SKP1.4
AT5G59030		COPT1	copper transporter 1 (.1)		Potri.001G246000 [exp]	27.96	0.7828
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Potri.003G167000 [exp]	30.33	0.7817	PtrGrx22

Compare expression of checked genes

Potri.001G218201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.