Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27260 94 / 5e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52460 62 / 4e-11 hydroxyproline-rich glycoprotein family protein (.1) AT4G05220 53 / 4e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22870 50 / 2e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G08160 50 / 2e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 47 / 4e-06 NHL2 NDR1/HIN1-like 2 (.1) AT2G35980 46 / 5e-06 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35460 45 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 45 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 40 / 0.0007 NHL3 NDR1/HIN1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G019800 [exp] 228 / 5e-75 AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204000 [exp] 76 / 4e-16 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G071200 [exp] 62 / 5e-11 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G071600 [exp] 58 / 6e-10 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 55 / 6e-09 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 51 / 1e-07 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 49 / 8e-07 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 46 / 7e-06 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.017G154000 [exp] 45 / 1e-05 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005216 [exp] 142 / 3e-41 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034173 [exp] 125 / 5e-35 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043411 [exp] 125 / 8e-35 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013329 [exp] 107 / 3e-29 AT2G27260 89 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021284 [exp] 82 / 7e-18 AT3G52460 164 / 1e-48 hydroxyproline-rich glycoprotein family protein (.1) Lus10021404 [exp] 56 / 3e-09 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 55 / 8e-09 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10041350 [exp] 47 / 6e-07 AT5G22870 94 / 3e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 49 / 9e-07 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006754 [exp] 48 / 1e-06 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.001G218300.1 pacid=42789135 polypeptide=Potri.001G218300.1.p locus=Potri.001G218300 ID=Potri.001G218300.1.v4.1 annot-version=v4.1 ATGGCGTCTTCAGACCCTTCCAGGCCCGCAACCGGCTACCCTTTTGTCCCAAACGGCCTCCACCACCCTCCACCACCGGCAGGCTCTGCCTATCCTTACC AAGCCCCACCACCACATCAACCCACTTACCCTTACACCTACAACACCAACCAAACTTACCCTAACCAACGCGCCATCTTCCTCCGCCGCTTAATTATCGC TCTAATCATCTTCACAGGCATCTTTTTCACCATTCTCTTCATTTGCTGGCTAGTCATCCGACCCCACTTCCCTGAATTTCGCGTCACCTCTCTCTCTATC TCCAACTTTAATGTCTCCTCATCGTCCTCCAGTGTGACTGGTACCTGGAACGCCAGGTTTCAGGTTTCTAATCCGAACAAGAAGATGAAAATCTCGTACA ATGAGATACAGACTTCGATCTTTTATAAATCGGAGTTCTTGTCCCAGACGAGGATTCCCCCGTTCAGACAGGGCAAAAGGAATGTCACTGATATCGATGT GGAATATGGGGCGACGAGTTCTTATATCGGCGAGCGGACGGTGAATCAGATTAATTCTGATGAAGGGCGTAGATTGGTGAGTTTTAATTTGAGGATTGTT GCTGATGCGGGGTTTAAGGTTGAAGGGTTTTGGGCAAGAAGAAGGTTGCTTAGGGTTTATTGTAATGATGTGGCAGTTGGGACTTCAGGGAATGGTCGAT CTGGGAACTTGACTGGTGGTGCCGTGCGATGTAGTGTTTATGCCTGA
AA sequence Show only first row Show all	>Potri.001G218300.1 pacid=42789135 polypeptide=Potri.001G218300.1.p locus=Potri.001G218300 ID=Potri.001G218300.1.v4.1 annot-version=v4.1 MASSDPSRPATGYPFVPNGLHHPPPPAGSAYPYQAPPPHQPTYPYTYNTNQTYPNQRAIFLRRLIIALIIFTGIFFTILFICWLVIRPHFPEFRVTSLSI SNFNVSSSSSSVTGTWNARFQVSNPNKKMKISYNEIQTSIFYKSEFLSQTRIPPFRQGKRNVTDIDVEYGATSSYIGERTVNQINSDEGRRLVSFNLRIV ADAGFKVEGFWARRRLLRVYCNDVAVGTSGNGRSGNLTGGAVRCSVYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27260			Late embryogenesis abundant (L...		Potri.001G218300 [exp]	0	1
AT5G64090			unknown protein		Potri.003G020500 [exp]	2.44	0.8651
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G029900 [exp]	7.61	0.8588
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	7.93	0.7921
AT4G24330			Protein of unknown function (D...		Potri.004G223000 [exp]	9.21	0.8132
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.018G133000 [exp]	16.73	0.7403
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.012G085600 [exp]	18.00	0.7111
AT2G18840			Integral membrane Yip1 family ...		Potri.018G093800 [exp]	18.65	0.8365
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	32.68	0.6960
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	32.86	0.7223	POR.1,TFCFC
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	34.75	0.7936

Compare expression of checked genes

Potri.001G218300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.