Plant FIBer expression Database

Potri.001G218400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44380 230 / 1e-77 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G165100
[exp]
49 / 2e-07 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.003G133400
[exp]
44 / 2e-05 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.006G112700
[exp]
41 / 0.0001 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004861
[exp]
236 / 4e-80 AT3G44380 251 / 3e-86 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10020628
[exp]
157 / 3e-49 AT3G44380 170 / 2e-54 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10023631
[exp]
48 / 1e-06 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10024264
[exp]
46 / 4e-06 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10031554
[exp]
44 / 2e-05 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10006764
[exp]
43 / 4e-05 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10007649
[exp]
42 / 8e-05 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10018361
[exp]
40 / 0.0003 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF03168 LEA_2 Late embryogenesis abundant protein
Representative CDS sequence
>Potri.001G218400.1 pacid=42792757 polypeptide=Potri.001G218400.1.p locus=Potri.001G218400 ID=Potri.001G218400.1.v4.1 annot-version=v4.1
ATGGGCAAAAAGGTAAAATGGAGCTGGACCGCCGCTTTAGTAGGAGCAGCATCTGCTACAGCAGCCGTGGCTCTAATCAGTGCCAAGCCAAAAGACCCAA
CTTTTCATTTGATCAAAATCAACTTCACTTCCTTCAAGCTCAGGTTTCCAGTCATCGACACCGATGTGATACTCACCGTACACGTCACCAACCCCAATAT
CATACCCATCCACTACTCCTCTACCATCATGTCGATCTTCTACGACGGCTCTCTCATCGGTTCGGCTCAAGTCGAAGCAGGGTCTCAGCGTTCGAGGTCT
TGCCAGATACTTGAGCTCACGGCCCGGCTTGATGGTGTCGAGCTGATGGCTAACCATTCCGTGAAGTTTTTCAGTGACGTGGCAAAGAGGGAGATGGTGC
TTGACGCTAAGGTGGATATCGGAGGTACGGCTAGGTTGTTGTGGTGGGGCCATCGGTTTAATGTACACGTGGATAGTCATATAACCGTTGACCCTTTGTT
TCTTGATATTATCGATCAAGAAAATAAGTCACGTCTTGATGTTTTTCTTGCTTGA
AA sequence
>Potri.001G218400.1 pacid=42792757 polypeptide=Potri.001G218400.1.p locus=Potri.001G218400 ID=Potri.001G218400.1.v4.1 annot-version=v4.1
MGKKVKWSWTAALVGAASATAAVALISAKPKDPTFHLIKINFTSFKLRFPVIDTDVILTVHVTNPNIIPIHYSSTIMSIFYDGSLIGSAQVEAGSQRSRS
CQILELTARLDGVELMANHSVKFFSDVAKREMVLDAKVDIGGTARLLWWGHRFNVHVDSHITVDPLFLDIIDQENKSRLDVFLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G44380 Late embryogenesis abundant (L... Potri.001G218400
[exp]
0 1
AT3G25470 bacterial hemolysin-related (.... Potri.014G175500
[exp]
1.00 0.9574
AT5G24690 Protein of unknown function (D... Potri.001G210500
[exp]
2.82 0.9197
AT5G24650 Mitochondrial import inner mem... Potri.015G000600
[exp]
4.47 0.9170
AT1G73400 Pentatricopeptide repeat (PPR)... Potri.010G098600
[exp]
10.39 0.9026
AT1G73770 unknown protein Potri.012G046000
[exp]
10.39 0.9240
AT5G22875 unknown protein Potri.004G217300
[exp]
11.13 0.8932
AT4G21860 MSRB2 methionine sulfoxide reductase... Potri.009G080700
[exp]
11.40 0.9337
AT4G09830 Uncharacterised conserved prot... Potri.005G196400
[exp]
13.71 0.8641
AT1G62680 Pentatricopeptide repeat (PPR)... Potri.016G136700
[exp]
13.74 0.9309
AT1G52730 Transducin/WD40 repeat-like su... Potri.001G174600
[exp]
14.14 0.9281

Potri.001G218400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.