Plant FIBer expression Database

Potri.001G219400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25570 379 / 1e-133 binding (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030074
[exp]
405 / 2e-143 AT2G25570 397 / 2e-140 binding (.1.2.3)
Lus10001073
[exp]
401 / 4e-142 AT2G25570 395 / 7e-140 binding (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF08238 Sel1 Sel1 repeat
Representative CDS sequence
>Potri.001G219400.5 pacid=42789227 polypeptide=Potri.001G219400.5.p locus=Potri.001G219400 ID=Potri.001G219400.5.v4.1 annot-version=v4.1
ATGCTTGGAAATTATGTCAAGAAGCCAGCTCTAGAGCTCGCTGCTCTTAGTCGTCTCCAGTTCTATAGAGAGATCCATGGTAGAAATAAGAAGGCGATGG
AGTTCATTGCGAAAGGATGGAGTGCTTTGAAGGAAGTGGATAGAGTCATTGATTACTGCGAACGCAATGATAAACGTCTTATCCCTCTCCTCAGAACAGC
GAAGGAGAATTTTCAGCTGGCTTTGGAGGTTGACAACTCCAATACCCATGCTAGGTATTGGTTGTCCAAATTGCATCTGAAGTACCATGTTCCAGGGCAA
AATCATGCTATAGGAGTTGCTTTATTAGTGGAAGCTGCAAATATGGGTGATCCAGAAGCACAATATGAATTAGGTTGTCGTCTAAGAGTTGAGAATGATT
ATGTCCAATCAGATCAACAAGCTTTCTATTATATAGAGAAGGCAGTTGAAAAGTTGCATCCTGGTGCTCTTTACCTTCTTGGTGCTGTATACTTGACGGG
GGATTGTGTGAAGAAAGATATCGCCTCAGCTTTGTGGTGTTTCCATAGGGCATCGGAGAAGGGACATGTTGGTGCTGCTATAGCATATGGATCTCTCCTC
CTTAGAGGCGCTCAGGTTCCAGAACATCTAACAAAATTCAGTTTGAAGAGGGGTTCATCTGCGAAAAAAATGAACAGCGCTGAAAATACTGAGATGAATC
CTGTAGAGAGAGCAAAGGAACAGTTCCAGATTGCAGCAAAAGCAGGATCTGATCTTGGATTAAAGTGGCTGCAAAGACTTGAAGAGGAAGAGAATCGTCT
CCTTGCGGAGAGTCATTCTAAGGAATCATCCTCCCAAAACTAA
AA sequence
>Potri.001G219400.5 pacid=42789227 polypeptide=Potri.001G219400.5.p locus=Potri.001G219400 ID=Potri.001G219400.5.v4.1 annot-version=v4.1
MLGNYVKKPALELAALSRLQFYREIHGRNKKAMEFIAKGWSALKEVDRVIDYCERNDKRLIPLLRTAKENFQLALEVDNSNTHARYWLSKLHLKYHVPGQ
NHAIGVALLVEAANMGDPEAQYELGCRLRVENDYVQSDQQAFYYIEKAVEKLHPGALYLLGAVYLTGDCVKKDIASALWCFHRASEKGHVGAAIAYGSLL
LRGAQVPEHLTKFSLKRGSSAKKMNSAENTEMNPVERAKEQFQIAAKAGSDLGLKWLQRLEEEENRLLAESHSKESSSQN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25570 binding (.1.2.3) Potri.001G219400
[exp]
0 1
AT1G66520 PDE194 pigment defective 194, formylt... Potri.017G123300
[exp]
9.38 0.6654
AT1G18450 ATARP4 actin-related protein 4 (.1) Potri.015G053100
[exp]
13.71 0.6550 Pt-ARP4.1
AT5G57230 Thioredoxin superfamily protei... Potri.006G076300
[exp]
14.89 0.6642
AT3G15750 Essential protein Yae1, N-term... Potri.003G201500
[exp]
17.97 0.5956
AT3G17300 EMB2786 unknown protein Potri.008G100400
[exp]
22.00 0.6048
AT2G02400 NAD(P)-binding Rossmann-fold s... Potri.004G230900
[exp]
27.36 0.6248
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Potri.009G047500
[exp]
29.74 0.6416
AT5G66760 SDH1-1 succinate dehydrogenase 1-1 (.... Potri.005G123900
[exp]
34.78 0.6155
AT5G38460 ALG6, ALG8 glycosyltransferase... Potri.004G100500
[exp]
52.04 0.5915
AT2G14050 MCM9 minichromosome maintenance 9 (... Potri.019G014403
[exp]
61.77 0.5662

Potri.001G219400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.