Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21090 348 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) AT3G43740 338 / 1e-119 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G71830 229 / 1e-71 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 225 / 3e-70 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 218 / 1e-67 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 209 / 2e-64 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 191 / 1e-57 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT4G30520 129 / 3e-34 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT3G25560 128 / 3e-34 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 127 / 5e-34 NIK1 NSP-interacting kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018800 [exp] 369 / 1e-131 AT5G21090 354 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) Potri.003G166200 [exp] 268 / 8e-92 AT5G21090 275 / 2e-94 Leucine-rich repeat (LRR) family protein (.1) Potri.001G061600 [exp] 265 / 1e-90 AT5G21090 272 / 2e-93 Leucine-rich repeat (LRR) family protein (.1) Potri.001G296500 [exp] 258 / 4e-88 AT3G43740 278 / 1e-95 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G090700 [exp] 256 / 4e-87 AT3G43740 270 / 2e-92 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.013G117200 [exp] 225 / 3e-70 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.019G087700 [exp] 224 / 1e-69 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.003G023000 [exp] 220 / 2e-68 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.005G083300 [exp] 220 / 3e-68 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002117 [exp] 264 / 4e-90 AT3G43740 273 / 9e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10002579 [exp] 259 / 3e-88 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10026751 [exp] 251 / 1e-85 AT5G21090 250 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) Lus10013902 [exp] 270 / 1e-84 AT1G49870 454 / 2e-145 unknown protein Lus10020962 [exp] 223 / 1e-69 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10001807 [exp] 211 / 2e-69 AT5G21090 227 / 9e-76 Leucine-rich repeat (LRR) family protein (.1) Lus10004958 [exp] 198 / 2e-64 AT1G34210 215 / 2e-66 somatic embryogenesis receptor-like kinase 2 (.1) Lus10042755 [exp] 191 / 2e-61 AT5G21090 199 / 8e-65 Leucine-rich repeat (LRR) family protein (.1) Lus10028716 [exp] 190 / 4e-57 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006057 [exp] 146 / 5e-41 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G219500.2 pacid=42789914 polypeptide=Potri.001G219500.2.p locus=Potri.001G219500 ID=Potri.001G219500.2.v4.1 annot-version=v4.1 ATGGCTGCACAGACATGGATATGGACTAGTCTAACTGTCGTGGTAACTGTAATTTTGACTGTGGTGAATGCTAACTCAGAAGGCGATGCTTTGTTTACGC TGAGAAAGAGCTTGTCGGATCCGGATAACGTTCTCCAGAGCTGGGATCCGACTCTTGTTAACCCTTGCACTTGGTTTCACATCACTTGCAACCAGGATAA TCGCGTCACTCGCGTGGACTTGGGGAACTCAAATCTATCTGGACATCTAGTACCTGAACTTGGAAGACTAGAGCATTTGCAATATCTGGAGCTTTATAAA AACAACATTCAAGGAATTATCCCCACTGAGCTAGGTAACTTGAAGAGCCTCGTTAGCTTGGACTTGTACAACAACAACATTTCAGGGACCATTCCTCCTT CACTGGGGAAGTTGAAGTCCCTTGTCTTTTTACGACTTAATGATAACCGATTAACTGGACCCATTCCCAGGGATCTCGCCAATGTTTCAAGCCTCAAAGT TGTGGATGTCTCGAGCAATGATTTATGTGGAACAATTCCTACTAATGGACCTTTTGAACACATCCCTTTGAACAACTTTGAGAACAATCCTCGACTGGAA GGTCCGGAGTTGCTGGGACTTGCGAGTTACGGCACAAATTGCTCATGA
AA sequence Show only first row Show all	>Potri.001G219500.2 pacid=42789914 polypeptide=Potri.001G219500.2.p locus=Potri.001G219500 ID=Potri.001G219500.2.v4.1 annot-version=v4.1 MAAQTWIWTSLTVVVTVILTVVNANSEGDALFTLRKSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRVDLGNSNLSGHLVPELGRLEHLQYLELYK NNIQGIIPTELGNLKSLVSLDLYNNNISGTIPPSLGKLKSLVFLRLNDNRLTGPIPRDLANVSSLKVVDVSSNDLCGTIPTNGPFEHIPLNNFENNPRLE GPELLGLASYGTNCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	0	1
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	2.64	0.7777	Pt-SCL1.2
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411400 [exp]	5.00	0.7536
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G337100 [exp]	9.79	0.7218
AT1G14670			Endomembrane protein 70 protei...		Potri.012G042300 [exp]	9.79	0.7293
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	10.09	0.7741	Pt-EIN3.1
AT5G52430			hydroxyproline-rich glycoprote...		Potri.001G102200 [exp]	10.24	0.7449
					Potri.010G060800 [exp]	10.95	0.6910
AT4G25433			peptidoglycan-binding LysM dom...		Potri.014G077900 [exp]	16.00	0.7111
AT3G07870			F-box and associated interacti...		Potri.002G223000 [exp]	16.70	0.7693
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	16.73	0.6669

Compare expression of checked genes

Potri.001G219500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.