Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGO903,AGO4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27040 1403 / 0 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21150 1282 / 0 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT5G21030 1094 / 0 PAZ domain-containing protein / piwi domain-containing protein (.1) AT2G32940 969 / 0 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G43810 508 / 4e-165 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 499 / 3e-161 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 491 / 1e-158 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 378 / 7e-116 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G31280 310 / 9e-91 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 308 / 6e-89 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024200 [exp] 1441 / 0 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.006G025900 [exp] 1439 / 0 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.008G010500 [exp] 1429 / 0 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.014G159400 [exp] 1183 / 0 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Potri.012G037100 [exp] 510 / 3e-165 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.009G001500 [exp] 504 / 7e-164 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.015G029000 [exp] 506 / 1e-163 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.001G213700 [exp] 499 / 1e-161 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.008G158800 [exp] 494 / 7e-160 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026750 [exp] 1358 / 0 AT5G21150 1253 / 0.0 ARGONAUTE 9, Argonaute family protein (.1) Lus10025537 [exp] 1289 / 0 AT5G21030 1234 / 0.0 PAZ domain-containing protein / piwi domain-containing protein (.1) Lus10015155 [exp] 1135 / 0 AT2G32940 1069 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10035331 [exp] 1112 / 0 AT2G32940 1080 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10029989 [exp] 987 / 0 AT2G32940 947 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10000295 [exp] 572 / 0 AT2G27040 514 / 2e-175 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Lus10031331 [exp] 506 / 2e-163 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 494 / 4e-161 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 494 / 7e-160 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10017983 [exp] 493 / 3e-157 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0219 [poplar] [flax] RNase_H PF02171 [poplar] [flax] Piwi Piwi domain CL0219 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0219 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute CL0219 [poplar] [flax] PF16487 [poplar] [flax] ArgoMid Mid domain of argonaute CL0219 [poplar] [flax] PF16488 [poplar] [flax] ArgoL2 Argonaute linker 2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G219700.6 pacid=42787685 polypeptide=Potri.001G219700.6.p locus=Potri.001G219700 ID=Potri.001G219700.6.v4.1 annot-version=v4.1 ATGGAGTCAGCTGATGAACAAAATGGAAATGGGTCACAGGAAGCCCTCCCACCTCCCCCTCCTGATGTTCCACCAAATGTTGTTCCAGTTAAAGCTGAAC CTGAGCCAGTCAAGAAAAAACCTCTGCGGGTTCCAATAGCCAGGCGTGGCCTTGGATCCAAAGGCCAAAAGATGCCTCTATTGACCAATCACTTTAAAGT CAATGTTACTAATACTGAGGGTTACTTCTTTCACTACTGTGTTTCCCTTGCTTATGAAGATGGCCGCCCTGTTGATGGTAAGGGTGTTGGAAGAAAGGTG ATTGATAGGGTGCATGAAACTTATGATACCGAGTTTGGAAAGGATTTTGCTTATGACGGTGAAAAGAGCTTGTTCACTGTTGGTCCCCTTCCTCGCAACA AGCTTGAGTTCACGGTTGTGCTTGAGGATGTAGTATCTAACAGAAATAATGGAAATGCAAGCCCTGATGGTCATGGAAGTCCAAATGAGGGTGACCGAAA GAGGTTGCGCCGTCCCTATCACTCCAAGACATTCAAAGTGGAGATCAGTTTTGCTGCAAAAATCCCCATGCAAGCCATTGCAAATGCCTTGCGTGGTCAG GAATCAGAGAATTCCCAAGAAGCCTTTAGAGTGCTGGATATTATATTGCGACAGCATGCCGCCAAGCAGGGCTGCCTCCTTGTGCGCCAATCCTTCTTCC ATAATGATCCAAAAAATTTTGTGGATTTGGGAGGCGGTGTTCTTGGCTGCAGAGGTTTCCACTCAAGTTTTAGAACATCTCAGGGAGGCTTGTCTCTTAA TATTGATGTGTCTACGACCATGATAATACAGCCAGGTCCTGTGGTAGATTTTCTAATTGCCAACCAAAATGTGAGAGATCCATTTTCACTTGACTGGGCG AAGGCGAAACGAATGCTCAAAAATCTGAGGGTTAAGGCAAGTCCTTCCAATCAAGAGTACAAGATAACTGGGTTGAGTGAGAAGACTTGTAAAGAACAAA TGTTTCAGTTGAAACAAAAAAATGGAGGGGATGGTGGGATCGAGGCTGTTGAAATAACTGTTTATGATTATTTTGTCAATCACCGCAAAATCGATTTACG ATATTCTGGTGATCTGCCATGCATTAATGTTGGGAAGCCAAAGCGCCCTACTTATATTCCTCTTGAGCTTTGTTCCCTGGTGTCCCTACAACGCTATACC AAAGCACTGTCCACACTTCAAAGGTCTTCACTGGTGGAGAAATCACGGCAGAAGCCGCAAGAAAGGATGACTGTTTTATCTAGTGCTCTGAAGAGCAGCA AGTATGATGCTGAACCTATGCTACGCTCGTGTGGCATTTCAATCAACCCTAGTTTCACACAAGTGGAAGGCCGTGTTCTGCCTGCTCCGAAGCTGAAAGT TGGCAACGGGGAAGATTTCTTCCCAAGAAATGGACGTTGGAATTTCAATAACAAGAAACTTGTGGAGCCATCTAGGATCGAGAAGTGGGCTGTCGTGAAC TTCTCAGCTCGCTGTGATATACGCAACCTTGTACAAAATCTCACAAAATGTGCAGAGATGAAAGGAATTCCCATAGAAGATCCTTTTGATGTATTTGAGG AGAATCCACAATCAAGACGTGCCCCACCAGTGGTTAGAGTGGAGAAAATGTTTGAGCAAATTCAGTCTAGACTTCCTGGGCAACCAAAGTTCTTACTGTG CTTGCTTCCTGAGAGAAAGAATTCTGATATATATGGCCCATGGAAGCGCAAAAATCTTGCTGAATATGGAATTGTCACTCAGTGCATTGCGCCTCAAAGA GTTAACGACCAATATATTACCAATGTTCTCCTGAAGATCAATGCAAAGCTTGGTGGGTTGAACTCTATGTTGGCTGTGGAACACGCCCCCTCATTACCTC TTGTGTCGAAGGTTCCCACGCTTATCCTTGGGATGGACGTGTCCCATGGCTCTCCTGGGCAGTCTGATGTCCCTTCAATTGCTGCGGTAGTCAGCTCCAG GCAGTGGCCTTTGATTTCTCGCTATCGGGCATGTGTGCGAACACAATCCCCAAAGCTTGAGATGATTGATTCATTATTTAAGCGAGTGTCTGAGACTGAG GATGAAGGAATAATTAGGGAGCTTCTGTTAGACTTTTATGTGACTTCAGGAAAAAGGAAACCCGATCAGATCATCATATTTAGAGACGGGGTCAGTGAAT CACAATTCAATCAGGTCTTGAATATCGAATTGGATCAGATAATTGAGGCGTGCAAGTTTCTTGATGAGAAGTGGTCCCCAACGTTTGTGGTAATTGTAGC TCAGAAAAACCACCACACTAAATTTTTCCAACCTGGATCTCCTGATAATGTACCACCTGGTACGATCATTGACAACAAAGTCTGCCATCCAAGAAACAAT GACTTCTATCTCTGTGCTCATGCTGGGATGATTGGGACTACAAGGCCTACTCACTACCATGTTTTGTTAGACGAGGTTGGTTTTTCAGCAGATGATCTGC AGGAACTTGTGCATTCCCTCTCATATGTATACCAAAGAAGCACGACTGCCATCTCTGTAGTTGCACCAATCTGCTATGCCCACCTGGCAGCTACTCAAAT GGGCCAGTTTATGAAGTTTGAAGATACTTCTGAGACTTCCTCAAGCCATGGTGGGGTGACCTCTGCAGGAGCTGTTCCTGTCCCACAGTTGCCGAGGTTG CAGGAGAAAGTTTGCAATTCCATGTTCTTTTGTTGA
AA sequence Show only first row Show all	>Potri.001G219700.6 pacid=42787685 polypeptide=Potri.001G219700.6.p locus=Potri.001G219700 ID=Potri.001G219700.6.v4.1 annot-version=v4.1 MESADEQNGNGSQEALPPPPPDVPPNVVPVKAEPEPVKKKPLRVPIARRGLGSKGQKMPLLTNHFKVNVTNTEGYFFHYCVSLAYEDGRPVDGKGVGRKV IDRVHETYDTEFGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDVVSNRNNGNASPDGHGSPNEGDRKRLRRPYHSKTFKVEISFAAKIPMQAIANALRGQ ESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTSQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSLDWA KAKRMLKNLRVKASPSNQEYKITGLSEKTCKEQMFQLKQKNGGDGGIEAVEITVYDYFVNHRKIDLRYSGDLPCINVGKPKRPTYIPLELCSLVSLQRYT KALSTLQRSSLVEKSRQKPQERMTVLSSALKSSKYDAEPMLRSCGISINPSFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPSRIEKWAVVN FSARCDIRNLVQNLTKCAEMKGIPIEDPFDVFEENPQSRRAPPVVRVEKMFEQIQSRLPGQPKFLLCLLPERKNSDIYGPWKRKNLAEYGIVTQCIAPQR VNDQYITNVLLKINAKLGGLNSMLAVEHAPSLPLVSKVPTLILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRACVRTQSPKLEMIDSLFKRVSETE DEGIIRELLLDFYVTSGKRKPDQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWSPTFVVIVAQKNHHTKFFQPGSPDNVPPGTIIDNKVCHPRNN DFYLCAHAGMIGTTRPTHYHVLLDEVGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDTSETSSSHGGVTSAGAVPVPQLPRL QEKVCNSMFFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.001G219700 [exp]	0	1	AGO903,AGO4.1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G222500 [exp]	2.44	0.7109
AT1G23170			Protein of unknown function DU...		Potri.017G124300 [exp]	3.46	0.7069
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	9.21	0.6515
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	12.40	0.6592
AT1G55790			Domain of unknown function (DU...		Potri.011G165600 [exp]	13.37	0.7194
AT1G27150			Tetratricopeptide repeat (TPR)...		Potri.010G035400 [exp]	19.26	0.6768
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Potri.010G119300 [exp]	20.19	0.6936	Pt-PAP2.2
AT1G61600			Protein of unknown function (D...		Potri.004G106100 [exp]	24.08	0.7172
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.016G024200 [exp]	24.59	0.7053
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Potri.015G073700 [exp]	27.23	0.6541	RDR904

Compare expression of checked genes

Potri.001G219700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.