Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21160 607 / 0 LA RNA-binding protein (.1.2.3) AT4G35890 105 / 1e-23 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 101 / 3e-22 winged-helix DNA-binding transcription factor family protein (.1) AT5G46250 76 / 2e-14 RNA-binding protein (.1.2.3) AT2G43970 57 / 5e-08 RNA-binding protein (.1.2) AT3G19090 53 / 8e-07 RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018100 [exp] 1232 / 0 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.005G109400 [exp] 125 / 8e-30 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.007G063600 [exp] 117 / 3e-27 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G243600 [exp] 106 / 1e-23 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.011G080700 [exp] 77 / 1e-14 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.017G007400 [exp] 57 / 5e-08 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.009G106500 [exp] 55 / 1e-07 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.007G144800 [exp] 55 / 2e-07 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.018G037900 [exp] 43 / 0.0009 AT4G32720 382 / 6e-130 La protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037431 [exp] 749 / 0 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10041277 [exp] 595 / 0 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10014254 [exp] 126 / 1e-30 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1) Lus10025953 [exp] 124 / 3e-30 AT4G35890 226 / 8e-69 winged-helix DNA-binding transcription factor family protein (.1) Lus10025951 [exp] 124 / 9e-30 AT4G35890 264 / 4e-82 winged-helix DNA-binding transcription factor family protein (.1) Lus10023315 [exp] 72 / 4e-13 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 72 / 7e-13 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10025608 [exp] 54 / 3e-07 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 53 / 8e-07 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain
Representative CDS sequence Show only first row Show all	>Potri.001G220100.1 pacid=42791102 polypeptide=Potri.001G220100.1.p locus=Potri.001G220100 ID=Potri.001G220100.1.v4.1 annot-version=v4.1 ATGGCGGAGAATGAGAGGGGAGATGATCAAAAGGGTAGTAGTATGGTTGGACCGAAGTCGCCGTGGAAGACTCCGGTGGTCGCTGATGCTCCGGTGATGG GCACCGCCGAATCTTGGCCTGCTTTGTCTGATGCTCAACAACAACAGCAACAACAACAACGGTCGAAACTCACTGATTCTGCTTCTAAGCCGCCGCCGCC GCCGACAGTAACGGTGGCTTCTGGTGGTGATACGGCTGCGCCACCGGAAGCTTCGCCTCGGGGGTTGTCTGGGCAGCAGAGATCACATGGATCTGGAAAC ACAATTTCTTCAAATAAGCATTCACCATCAAGACATCAAAAATCAGGATCTAAGCGCAATCCTAATGGGGCACCACCTTTCCCTGCACCATTCCCTTATC AGCAACCACACATTCCTCCAGTTTACCCTGCTATAGTACCTCCACCACACATTGCTGTTTCTGGTTTTGCATATCAACCTGGGCCGCCACCTTTTCCCCC TGTTGAAAATCATTTGGTAAAGTCTGGATCAGATGCATCCCCTATGCAACCTTTTGTTCCACCTGTTAATGTCCAGCCTCCACCAAGAGGGGATCCCAAT GCTTATGCTGTTAACTTTCCAAATCGAAGGCTGAATGGGCAAGAATCCGGTGGCCATTTGAATCAATTATGGCATCATCAACGGGCATTTGGGCCCAGAG ATAACATCGTGTTGCAACAGGGTATGGGACCAAGGCATTTGATAAGGCCTCCTTTTTTTGCTTCACCTCCAGGGTTCATGGTTGGTCCAACATACCCTGG ACCTCCTATATGCTACATTCCTGTTGCATCTCCAGGCTCTCTTAGGGGACCTCATCCTCCCCGTTTTGTTCCATATCCAATCAATCCAGGGGCTCCTATG CTTCCTCAAGAGATACAAACTTTGAGGGCTAGCATAATAAGACAAATAGAGTATTATTTCAGTGATGAAAATCTGCTGAATGACCATTATCTAATATCCT TGATGGATGACCAAGGATGGGTTCCCATATCCACGATTGCTGAATTTAAAAGGGTTAAGAAAATGACGACAGACATATCATTGATCCTTGATGCGCTGCA GAGTTCTGGCTCAATAGAAGTGCAGGGTGAAAAGATTCGGAAACGTGATTACTGGTCAAAGTGGATTCCTGCTTCTTCTCAGCAAGCAATGTCACTGAAA GCTCAGACTTCCGAGGGCCAACCTGGAAAGAATGCTGAGGAAGATAGCACAAGCGGTCTCTCCAAAGAAAGTGCTGAATTTTCTCCTTGCACTACAGTCA AGGAAGCAAAGAAATTGTCAAATGGAGATATTGGTAAACTGGAAGGTGATGAGAAGTCTGTCTTGTTTAAAGCTGGAAAACCTGGATTTGATGGGGATTC TGATCTTGGTGCTTGTTATACCACTCCCTATCCAGACAATACACAAGGATTTAGGCCTTTGGCACTCAATTATCATGTGACTGAAGGCATGGAAGATGCA CAGAATCTTGCTGATTTTTCTAATGATTTTGCCAACACATTTATGCTTGATGAAGAGCTAGAGCTGGAGCAGAAATCACTCAAGAATGAAGGCTGTTCTC CAGTTAGAAGGGTGGATGACGAAGAGGATGAGATGGTGGTCAATGATCAGGATGTTCAAAGACTTGTAATTGTCACCCAGAATAGTAGACCAGGAGAAGA ATCTATTAAATCTGGGGATAAATCAAAATCTATTTCAATTGAGCTTGCTTCAGCAATAAATGATGGTTTATACTTCTATGAACAGGAGCTAAAAACAAAG CGATCTAATCGTAGAAAGAATAGTTCTAGCTATTCAAAGGCTGGTGAAATTTCCGCTGCAAGCTGTGTCCATGAAGAGTCAGGAAGCTCCAACCACACAA GGAAACAAAACAAAGGTTTTCCCAAGCAGCAGTCATCTCATACGCAACGATTCTTCTCCAGCAACTTTAGGAATCATGGCACTGGTCGTAATAATTTTGG AATCATATCAGAAAGTCCACCAAGTAATTCAGTTGGATTTTTCTTTAGTTCTACACCTCCTGAAAATCACGGACCCAGGTCTTCAAAGCTGAGTGTTTCA CCACATGGCATGCTCTCAGGCAGCAGTCCACCAGTGGGTTCCATGCCAAATTCATTTCCACCATTTCAGCATCCCAGCCATCAACTCTTAGAAGAAAATG GCTTTAAACAGCAGAAGTACCTGAAGTATCGTAAACGGTGCTTAAATGATAGAAAGAAGATGGGAATAGGTTGCAGTGAGGAAATGAACACACTGTATAG GTTTTGGTCGTACTTCCTTAGAAACATGTTTGTCCCTTCTATGTACAATGAGTTCCGAAAATTTGCTCTGGAAGATGCTTCTGCTAATTACTATTATGGG ATGGAGTGCCTTTTCAGGTTCTATAGCTATGGTTTGGAGAAGGAGTTCAGAGATGACCTGTACAAGGACTTTGAAGAACTCACCCTTGACTTCTATTGCA AAGGCAACATTTATGGCCTCGAAAAATATTGGGCCTTCCACCATTATTGTGGTCTAGGTGACAAAGAACCAAAGAAACATCCAGAATTGGACAGGTTACT GAGAGAAGAATACCGTAGCTTGGAGGACTTCCATGCCAGAGAGAGGTCCATGAAGAAGGACGGCCATTAG
AA sequence Show only first row Show all	>Potri.001G220100.1 pacid=42791102 polypeptide=Potri.001G220100.1.p locus=Potri.001G220100 ID=Potri.001G220100.1.v4.1 annot-version=v4.1 MAENERGDDQKGSSMVGPKSPWKTPVVADAPVMGTAESWPALSDAQQQQQQQQRSKLTDSASKPPPPPTVTVASGGDTAAPPEASPRGLSGQQRSHGSGN TISSNKHSPSRHQKSGSKRNPNGAPPFPAPFPYQQPHIPPVYPAIVPPPHIAVSGFAYQPGPPPFPPVENHLVKSGSDASPMQPFVPPVNVQPPPRGDPN AYAVNFPNRRLNGQESGGHLNQLWHHQRAFGPRDNIVLQQGMGPRHLIRPPFFASPPGFMVGPTYPGPPICYIPVASPGSLRGPHPPRFVPYPINPGAPM LPQEIQTLRASIIRQIEYYFSDENLLNDHYLISLMDDQGWVPISTIAEFKRVKKMTTDISLILDALQSSGSIEVQGEKIRKRDYWSKWIPASSQQAMSLK AQTSEGQPGKNAEEDSTSGLSKESAEFSPCTTVKEAKKLSNGDIGKLEGDEKSVLFKAGKPGFDGDSDLGACYTTPYPDNTQGFRPLALNYHVTEGMEDA QNLADFSNDFANTFMLDEELELEQKSLKNEGCSPVRRVDDEEDEMVVNDQDVQRLVIVTQNSRPGEESIKSGDKSKSISIELASAINDGLYFYEQELKTK RSNRRKNSSSYSKAGEISAASCVHEESGSSNHTRKQNKGFPKQQSSHTQRFFSSNFRNHGTGRNNFGIISESPPSNSVGFFFSSTPPENHGPRSSKLSVS PHGMLSGSSPPVGSMPNSFPPFQHPSHQLLEENGFKQQKYLKYRKRCLNDRKKMGIGCSEEMNTLYRFWSYFLRNMFVPSMYNEFRKFALEDASANYYYG MECLFRFYSYGLEKEFRDDLYKDFEELTLDFYCKGNIYGLEKYWAFHHYCGLGDKEPKKHPELDRLLREEYRSLEDFHARERSMKKDGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21160			LA RNA-binding protein (.1.2.3...		Potri.001G220100 [exp]	0	1
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	5.83	0.7722	Pt-TOP1.2
AT1G18950			DDT domain superfamily (.1)		Potri.015G067300 [exp]	6.63	0.7677
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	8.06	0.7511
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.011G161901 [exp]	9.16	0.7673
AT5G15700			DNA/RNA polymerases superfamil...		Potri.017G105801 [exp]	10.19	0.7185
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	15.87	0.7673	CHR928,PIE1.4
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.015G066500 [exp]	17.34	0.7344
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	20.34	0.7488
AT3G56990		EDA7	embryo sac development arrest ...		Potri.016G037400 [exp]	21.42	0.7110
AT3G09060			Pentatricopeptide repeat (PPR)...		Potri.016G111600 [exp]	27.85	0.7343

Compare expression of checked genes

Potri.001G220100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.