Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77450 66 / 5e-12 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G01720 60 / 7e-10 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G10500 59 / 3e-09 NAC ANAC053 NAC domain containing protein 53 (.1) AT1G65910 59 / 4e-09 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G15510 57 / 9e-09 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G10490 56 / 1e-08 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT4G01520 56 / 2e-08 NAC ANAC067 NAC domain containing protein 67 (.1) AT3G10480 56 / 3e-08 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G04070 55 / 3e-08 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G79580 55 / 4e-08 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231300 [exp] 95 / 2e-21 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.019G063000 [exp] 83 / 4e-18 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.015G002900 [exp] 77 / 2e-15 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.016G027900 [exp] 77 / 3e-15 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028900 [exp] 75 / 6e-15 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028300 [exp] 75 / 1e-14 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.017G058100 [exp] 72 / 1e-13 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 71 / 3e-13 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.004G038000 [exp] 64 / 3e-11 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033676 [exp] 105 / 1e-24 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10003334 [exp] 69 / 6e-14 AT1G61110 50 / 1e-07 NAC domain containing protein 25 (.1) Lus10015076 [exp] 70 / 5e-13 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10023179 [exp] 70 / 5e-13 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10031937 [exp] 69 / 1e-12 AT1G77450 67 / 1e-12 NAC domain containing protein 32 (.1) Lus10010294 [exp] 69 / 2e-12 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10008200 [exp] 66 / 2e-12 ND 43 / 6e-05 Lus10008240 [exp] 67 / 4e-12 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10026496 [exp] 66 / 1e-11 AT1G61110 244 / 6e-79 NAC domain containing protein 25 (.1) Lus10019926 [exp] 65 / 3e-11 AT1G61110 243 / 4e-78 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G220500.3 pacid=42789765 polypeptide=Potri.001G220500.3.p locus=Potri.001G220500 ID=Potri.001G220500.3.v4.1 annot-version=v4.1 ATGCAAGACTCAAATGATCCAGCCAGGAGGTACGGGCTTGTTCAACGCCAAATGCCAACTGGGTGCAGATTTGCTCCCTCCGATGAAGTACTGGTCATTC ATTATCTCTCCAAGAAAGGCAAGAACGAGCCACTGCCATGTCCATATGCAGTACGGGAATGTGATCTTTATGGCAGAGAACCTGAGGAGATATGGAAGGA ATTTGGCGGAGACAGATTGAAGAGAAAAATAGACCAAGACCTTGGTCTCTTTTTCTTTACAAGATTGAAGAAGAAGAGTGGCACTGATCATGGAAGCTCA AGAATTGATAGGTCAGTTGGTAATAATATTGGTACCTGGCATGAAGAATGTGCTCTTCGTAGCATTACATGTAGTGAGACAAAAAAGAACATTGGGTCAA AGAAAAGATTTGTTTACAAGAGTAACAAGAGCCATAATAGAGGTAGAGTAAGTTGGCATATGCTTGAGATTAGTCTTCCTGATAATACTAGCGATCATGT AGTGTGTCAGTTGAAAAGGAAAGAGAGAAATTCAATAAAATCTGGAAGAGGAGATGCAGGAGTACTGGAGAATGGTAATGGTGAGGGTGCTCAAAAACGT CAGAGGACAGTTTCTTGGACAAATCAAGAAGCAGGGCCTAGTTTCTTTAACAGCAACAAAACCCTAGAATCTTATGATGAGGCAAAGAGAAATTCTAGTG GAAGTGGCAAGGAAATGTTAGCGAGTAATTCAATAGAATCTGGAAGAGGAGATGCAGGAGTGGAGAACGGCAATGATCAAGGTGCTCAAAAACGTCAGAG GACAGTTTCTTGGACAAATCAAGAAGCAGGGCCTAGTTTCTTTAACAGCAATAAAACCCCAGAATCTTATGAGGCAAAGAGAAATTCTACTGTGTGTGGC AAGGAGATGGGAGCCTCAATTGATGGTGGTCATTCTTTTGATCTGAATATAGAGTGGACTAATCCGGATGAAGATGACACATATACATCTCATAAAGAGC GGCAGCCGCACTTCAGCTCCGGGAAGAAGATGACCGAGATAGCTTCTTCAAGTCTAGCATCATTAGAAACTGGTAAAAGCACTAATCATGTGAAGAACGC CAAAAAAACGCTGCGCTTTGACGTTAACATTATCACATTTTTCCACCCCACAACCACCCCTTGA
AA sequence Show only first row Show all	>Potri.001G220500.3 pacid=42789765 polypeptide=Potri.001G220500.3.p locus=Potri.001G220500 ID=Potri.001G220500.3.v4.1 annot-version=v4.1 MQDSNDPARRYGLVQRQMPTGCRFAPSDEVLVIHYLSKKGKNEPLPCPYAVRECDLYGREPEEIWKEFGGDRLKRKIDQDLGLFFFTRLKKKSGTDHGSS RIDRSVGNNIGTWHEECALRSITCSETKKNIGSKKRFVYKSNKSHNRGRVSWHMLEISLPDNTSDHVVCQLKRKERNSIKSGRGDAGVLENGNGEGAQKR QRTVSWTNQEAGPSFFNSNKTLESYDEAKRNSSGSGKEMLASNSIESGRGDAGVENGNDQGAQKRQRTVSWTNQEAGPSFFNSNKTPESYEAKRNSTVCG KEMGASIDGGHSFDLNIEWTNPDEDDTYTSHKERQPHFSSGKKMTEIASSSLASLETGKSTNHVKNAKKTLRFDVNIITFFHPTTTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Potri.001G220500 [exp]	0	1
AT1G18760			Zinc finger, C3HC4 type (RING ...		Potri.002G083001 [exp]	1.00	0.9901
AT4G33230			Plant invertase/pectin methyle...		Potri.003G021600 [exp]	2.00	0.9851
					Potri.011G044012 [exp]	3.46	0.9772
AT4G18230			unknown protein		Potri.002G170700 [exp]	14.49	0.9638
					Potri.019G042001 [exp]	15.49	0.9698
AT1G50060			CAP (Cysteine-rich secretory p...		Potri.009G083600 [exp]	15.62	0.9820
AT4G16265		NRPE9B, NRPD9B,...	RNA polymerases M/15 Kd subuni...		Potri.010G142500 [exp]	20.04	0.9793
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.009G039100 [exp]	20.54	0.8553
					Potri.002G099150 [exp]	21.16	0.9792
AT5G40140			RING/U-box superfamily protein...		Potri.017G073400 [exp]	22.44	0.9791

Compare expression of checked genes

Potri.001G220500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.