Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20030 251 / 2e-83 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 248 / 1e-81 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 232 / 2e-76 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 224 / 2e-73 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 227 / 3e-73 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 219 / 1e-71 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 220 / 3e-71 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 215 / 5e-70 ATLP-3 thaumatin-like protein 3 (.1) AT5G38280 225 / 2e-69 PR5K PR5-like receptor kinase (.1) AT4G38670 212 / 2e-68 Pathogenesis-related thaumatin superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G221500 [exp] 345 / 3e-121 AT1G75800 269 / 6e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221200 [exp] 340 / 4e-119 AT1G75800 254 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 337 / 3e-118 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 334 / 6e-117 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221400 [exp] 332 / 4e-116 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 332 / 5e-116 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221800 [exp] 332 / 7e-116 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221700 [exp] 329 / 7e-115 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G284305 [exp] 324 / 8e-113 AT1G75800 270 / 3e-90 Pathogenesis-related thaumatin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023897 [exp] 261 / 3e-88 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 253 / 8e-84 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004410 [exp] 250 / 1e-83 AT1G20030 252 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10033136 [exp] 249 / 2e-82 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 244 / 5e-80 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 239 / 5e-79 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 229 / 7e-75 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 213 / 5e-68 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 213 / 6e-68 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 210 / 4e-67 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.001G220900.1 pacid=42793078 polypeptide=Potri.001G220900.1.p locus=Potri.001G220900 ID=Potri.001G220900.1.v4.1 annot-version=v4.1 ATGGCCAATCAAATTCCCTTGGCACTTACCTTCACCTTACTCCTCGTCTGTTTCAAACATGCAGGAGCTCTATCGGTCACCTTTTCCTTTAAGAACAACT GCCCATTCACTGTTTGGCCAGCAAGCCTAAATAATGCTGACAGTCCACAGCTGTCTTCGACAGGCTTTGCTCTGACAGCAGGTGCTTCATCCTCCCTGAG TACCCCTGTGCCATGGTCTGGTCGGTTCTGGGGTCGAACGCGATGCAATACAGATTCCTCAGGCAAGTTTACTTGTGCAACCGGTGATTGTGCCTCTGGT CGAATAGAATGCCATGGTGCTGGTGGTATACCACCGGCATCCTTGGCAGAGTTCGCTCTAAGAGCTAATGACGGGCACGACTACTATGATATCAGCCTGG TGGATGGTTTTAACATCCCCCTTTCAGTAATTCCACAAGGAGGTTCTAGCGAGTGCCGTTCCACGAGCTGTGCAGCTAATGTGAACGCTGTTTGTGATTC TAAATTAGCTGTTAAAGGGTCTGATGGGACTGTGATTGCCTGCAAGAGTGCATGTTTGGCATTCAACCAGCCACAGTTCTGCTGCACTGGTGAGTTCAGT ACACCAGACAAGTGCCTTGCTACCAACTACTCAAGCACTTTCAAGCAACAGTGCCCTGAGGCTTATAGTTATGCTTATGATGATAAAAGTAGCCTACTTA CTTGTCCTAGTGGATCTAACTATGTGATCAACTTCTGTCCATGA
AA sequence Show only first row Show all	>Potri.001G220900.1 pacid=42793078 polypeptide=Potri.001G220900.1.p locus=Potri.001G220900 ID=Potri.001G220900.1.v4.1 annot-version=v4.1 MANQIPLALTFTLLLVCFKHAGALSVTFSFKNNCPFTVWPASLNNADSPQLSSTGFALTAGASSSLSTPVPWSGRFWGRTRCNTDSSGKFTCATGDCASG RIECHGAGGIPPASLAEFALRANDGHDYYDISLVDGFNIPLSVIPQGGSSECRSTSCAANVNAVCDSKLAVKGSDGTVIACKSACLAFNQPQFCCTGEFS TPDKCLATNYSSTFKQQCPEAYSYAYDDKSSLLTCPSGSNYVINFCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20030			Pathogenesis-related thaumatin...		Potri.001G220900 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	3.87	0.8588
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037200 [exp]	5.38	0.7679
AT4G39230			NmrA-like negative transcripti...		Potri.007G036500 [exp]	7.07	0.8845	PCBER5
AT5G16740			Transmembrane amino acid trans...		Potri.002G233200 [exp]	10.95	0.7873
AT1G58170			Disease resistance-responsive ...		Potri.016G061000 [exp]	11.22	0.7610
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.003G134500 [exp]	11.57	0.7325
AT4G21960		PRXR1	Peroxidase superfamily protein...		Potri.004G015300 [exp]	12.00	0.8045	Pt-PRXR1.1
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.002G145750 [exp]	17.05	0.6929
AT3G22142			Bifunctional inhibitor/lipid-t...		Potri.006G008300 [exp]	17.32	0.7983
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Potri.005G056000 [exp]	20.97	0.6867

Compare expression of checked genes

Potri.001G220900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.