Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26060 524 / 0 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G32990 423 / 5e-149 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 103 / 4e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 97 / 1e-22 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 98 / 4e-22 TAF5 TBP-associated factor 5 (.1) AT5G67320 95 / 4e-21 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G52820 93 / 1e-20 WD-40 repeat family protein / notchless protein, putative (.1) AT2G41500 90 / 1e-19 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G73720 82 / 4e-17 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT5G13480 82 / 5e-17 FY Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212800 [exp] 639 / 0 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G136700 [exp] 170 / 1e-52 AT2G26060 156 / 2e-47 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G221150 [exp] 162 / 5e-50 AT2G26060 124 / 1e-35 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 100 / 7e-24 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 102 / 1e-23 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 98 / 5e-23 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 94 / 9e-22 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 96 / 2e-21 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G050100 [exp] 90 / 1e-19 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017045 [exp] 538 / 0 AT2G26060 486 / 5e-174 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021365 [exp] 534 / 0 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024447 [exp] 112 / 4e-27 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10004167 [exp] 100 / 6e-23 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 100 / 9e-23 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10007449 [exp] 99 / 2e-22 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10014674 [exp] 93 / 3e-21 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 93 / 3e-21 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 92 / 1e-20 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 89 / 6e-20 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G221000.1 pacid=42790628 polypeptide=Potri.001G221000.1.p locus=Potri.001G221000 ID=Potri.001G221000.1.v4.1 annot-version=v4.1 ATGGAGGATTTGTGCGATGGCAACATGGAGTTGAAGGAGATTCAAACCCTGGCAGGACACTCCGATAGGGTTTGGAGCTTGGCTTGGAATCCGGCCACCG GAACTTCTAATAATCCTCCTGTATTGGCTTCTTGTAGTGGCGATAAGACTGTTCGAATTTGGGAGCAGACTCCTTCCAATCGCCTTTGGCATTGCAAGGC AGTTCTGGAAGAAACCCACACTCGAACTGTTCGGTCTTGTGCCTGGTCTCCTTGTGGGAAATTTTTGGCCACCGCCAGCTTTGATGCCACCACCGCCATT TGGGAGAACATTGGCGGTGATTTCGAATGCGTTTCTACTTTAGAGGGTCATGAAAATGAAGTGAAGTGTGTGAGTTGGAATGCATCAGGTTCGCTCCTGG CGACGTGTAGTAGGGATAAGACTGTTTGGATATGGGAAGTGATGCCTGGGAATGAATTTGAGTGTGTTTCAGTTTTGCAAGGACATACACAAGATGTTAA AATGGTTAAATGGCATCCAACTATGGATGTTTTGTTTTCTTGTAGCTATGATAACACTGTTAAGGTTTGGGCTGAGGATGGTACTGGTGATTGGCATTGT GTTCAATCCTTAGGTGAATCTAACAATGGTCACTCTTCTACTGTCTGGGCACTTGCTTTTAATGCTGAAGGAAACAGAATGGTTACCTGTAGTGATGATC TTACACTAAAAATATGGGAAACAGATGTTGGAGGGATGCAATCAGGCAATGACCTTGTTTCTTGGAATCACCTTTGCACTCTCTCGGGTTATCATGATAG AACAATCTTTTCAGTTCATTGGTCAAGGGAAGGTATTATAGCAAGTGGAGCAGCTGATGATGCACTGCGGTTTTTCGTGGAGAGCAAAGATGGTTTGGTT GATGGTCCTTCATATAAACTGTTGTTGAAAAGGGAAAAGGCTCATGAAATGGACATAAACTCAGTGCAATGGGGCCCTGGGGAAACCGGGCTGCTTGCTT CCACAAGTGATGATGGGACAATAAAGATATGGGAGCTGGCAACTCTGACCTGA
AA sequence Show only first row Show all	>Potri.001G221000.1 pacid=42790628 polypeptide=Potri.001G221000.1.p locus=Potri.001G221000 ID=Potri.001G221000.1.v4.1 annot-version=v4.1 MEDLCDGNMELKEIQTLAGHSDRVWSLAWNPATGTSNNPPVLASCSGDKTVRIWEQTPSNRLWHCKAVLEETHTRTVRSCAWSPCGKFLATASFDATTAI WENIGGDFECVSTLEGHENEVKCVSWNASGSLLATCSRDKTVWIWEVMPGNEFECVSVLQGHTQDVKMVKWHPTMDVLFSCSYDNTVKVWAEDGTGDWHC VQSLGESNNGHSSTVWALAFNAEGNRMVTCSDDLTLKIWETDVGGMQSGNDLVSWNHLCTLSGYHDRTIFSVHWSREGIIASGAADDALRFFVESKDGLV DGPSYKLLLKREKAHEMDINSVQWGPGETGLLASTSDDGTIKIWELATLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.001G221000 [exp]	0	1
					Potri.016G019100 [exp]	6.70	0.6804
AT5G10350			RNA-binding (RRM/RBD/RNP motif...		Potri.005G073200 [exp]	11.40	0.7054
AT2G38450			unknown protein		Potri.008G075000 [exp]	12.96	0.7610
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Potri.008G157500 [exp]	17.23	0.7036
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.005G105700 [exp]	17.49	0.6634
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.006G194100 [exp]	21.44	0.6790	SINAT2.2
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.003G098000 [exp]	25.29	0.6871
AT4G29850			Eukaryotic protein of unknown ...		Potri.006G072000 [exp]	25.78	0.6586
AT5G04750			F1F0-ATPase inhibitor protein,...		Potri.008G016801 [exp]	28.39	0.6491
AT1G18720			Protein of unknown function (D...		Potri.008G088800 [exp]	31.17	0.6464

Compare expression of checked genes

Potri.001G221000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.