Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 278 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 270 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 253 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G75050 252 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 252 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 254 / 5e-84 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75040 248 / 3e-83 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G36010 242 / 7e-80 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 239 / 2e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 235 / 5e-78 ATLP-3 thaumatin-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G221200 [exp] 477 / 3e-173 AT1G75800 254 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 473 / 1e-171 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 465 / 1e-168 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221500 [exp] 465 / 1e-168 AT1G75800 269 / 6e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221800 [exp] 462 / 3e-167 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221400 [exp] 460 / 1e-166 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G284305 [exp] 440 / 1e-158 AT1G75800 270 / 3e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221700 [exp] 421 / 4e-151 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G220900 [exp] 364 / 1e-128 AT1G20030 251 / 2e-83 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023897 [exp] 301 / 7e-104 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 279 / 7e-94 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 275 / 2e-92 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 272 / 4e-91 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004410 [exp] 269 / 4e-91 AT1G20030 252 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 266 / 2e-89 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 258 / 3e-86 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10032726 [exp] 241 / 5e-80 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10041899 [exp] 243 / 1e-79 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 242 / 2e-79 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.001G221100.2 pacid=42792001 polypeptide=Potri.001G221100.2.p locus=Potri.001G221100 ID=Potri.001G221100.2.v4.1 annot-version=v4.1 ATGGGGAGTCGTATGCCCATTGCTATAATTACCTTCACCCTCGTCATCTTCCTCTATGCTTGCACGCATGCAGGAGCTCAATCTGTGACTTTTGTCGTCA AAAACAACTGTCCATACACAGTCTGGCCAGGAACTCTAACGGCTGCTGGCCGTCCGACTATATCTTCAACTGGCTTCACATTGGCAACAGGTGCTTCATC TTCGCTAAGTGTCCCTGCAACATGGTCTGGTCGCTTGTGGGCCAGAACACAATGCTCTACAGATTCCTCAGGAAAGTTTGTTTGTGCTACTGCTGACTGT GCCTCCGGTGTCATAGAATGCAATGGAGCCGGTGCGATCCCACCAGCATCCTTAGCAGAATTCACTCTAAGAGGTGATGGTGGGAAAGATTTTTACGATA TAAGCCTTGTTGACGGCTTTAACATCCCAATTTCGATAACCCCGCAAGGAGGTTCTACTGGCTGCCCTTCTACAAGCTGTGCAGCTAACGTGAATGCTGT TTGTGATCCTAGTTTGGCAGTGAAGGGGGCAGATGGGACTGTGATTGCCTGCAAGAGTGCGTGTTTGGCATTTAACCAGCCGCAGTACTGCTGCACAGGA GACCATAATACAGCTGACACATGTCCTCCTACCCAATATTCGATGACTTTCAAGCAGCAGTGTCCTCAAGCTTATAGTTATGCTTATGATGATAAATCGA GCACGTTTACTTGTCCTAGTGGAGGCAACTATTTGATTACCTTTTGTCCATGA
AA sequence Show only first row Show all	>Potri.001G221100.2 pacid=42792001 polypeptide=Potri.001G221100.2.p locus=Potri.001G221100 ID=Potri.001G221100.2.v4.1 annot-version=v4.1 MGSRMPIAIITFTLVIFLYACTHAGAQSVTFVVKNNCPYTVWPGTLTAAGRPTISSTGFTLATGASSSLSVPATWSGRLWARTQCSTDSSGKFVCATADC ASGVIECNGAGAIPPASLAEFTLRGDGGKDFYDISLVDGFNIPISITPQGGSTGCPSTSCAANVNAVCDPSLAVKGADGTVIACKSACLAFNQPQYCCTG DHNTADTCPPTQYSMTFKQQCPQAYSYAYDDKSSTFTCPSGGNYLITFCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221100 [exp]	0	1
AT1G12330			unknown protein		Potri.003G115700 [exp]	2.44	0.9574
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.001G288401 [exp]	2.44	0.9658
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G043600 [exp]	8.88	0.9440
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221200 [exp]	9.79	0.9546
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245266 [exp]	10.39	0.9695
					Potri.006G055701 [exp]	24.33	0.8744
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G008666 [exp]	24.65	0.9573
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Potri.001G347300 [exp]	29.32	0.9552
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.001G310600 [exp]	35.39	0.9538
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232500 [exp]	36.87	0.9522

Compare expression of checked genes

Potri.001G221100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.