Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 255 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 252 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 238 / 5e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38670 236 / 1e-77 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G75050 229 / 1e-75 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 231 / 2e-75 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 230 / 2e-74 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75040 225 / 4e-74 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G19320 223 / 5e-73 Pathogenesis-related thaumatin superfamily protein (.1) AT5G38280 227 / 4e-70 PR5K PR5-like receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G221100 [exp] 447 / 1e-161 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 442 / 1e-159 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221500 [exp] 432 / 1e-155 AT1G75800 269 / 6e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221400 [exp] 428 / 8e-154 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 420 / 9e-151 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221800 [exp] 409 / 3e-146 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221700 [exp] 389 / 1e-138 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G284305 [exp] 389 / 1e-138 AT1G75800 270 / 3e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G220900 [exp] 340 / 4e-119 AT1G20030 251 / 2e-83 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023897 [exp] 277 / 2e-94 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 260 / 1e-86 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 254 / 2e-84 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 252 / 2e-83 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004410 [exp] 248 / 1e-82 AT1G20030 252 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 246 / 2e-81 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 239 / 1e-78 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10032726 [exp] 221 / 3e-72 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10017266 [exp] 223 / 8e-72 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10013561 [exp] 222 / 2e-71 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.001G221200.1 pacid=42790633 polypeptide=Potri.001G221200.1.p locus=Potri.001G221200 ID=Potri.001G221200.1.v4.1 annot-version=v4.1 ATGGGGAGTCGTATGCCCTTTGCTATAATTACCTTCACCCTCGTCATCTTCCTCTATGCTTGCACGCATGCAGGAGCTCAATCTGTGACTTTCGTCGTCA AAAACAACTGTCCATACACAGTCTGGCCAGGAACTCTAACGGCTGCTGGCCGTCCGCCTATATCTTCAACTGGCCTCACATTGGCAACAGGTGCTTCATC TTCGCTAAGTGTCCCTGCAACATGGTCTGGTCGCTTGTGGGCCAGAACTCAATGCTCTACAGATGCCTCCGGAAAGTTTGTTTGTGCTACTGCTGACTGT GCCTCTGGTGTCATAGAATGCAATGGAGCCGGTGCGATCCCACCAGCATCCTTCGCAGAATTTACTCTAAGAGGTGATGGTGGGAAAGATTTTTACGATA TAAGCCTTGTTGATGGCTTTAACACCCCAATTTCGGTAACCCCGCAAGGAGGTTCTACTGGCTGCCCTACTACAAGCTGTGCAGCTAACGTGAATGCTGT TTGTGATCCTAGATTAGCAGTGAAGGGGGCAGATGGGACTGTGATTGCCTGCAAGAGCGCGTGTTTGGAATTTCACCAGCCGCAGTTCTGCTGCACAGGA GAGTACAGTACACCTGACAAATGTCCTCCTACCCAATATTCGATGACTTTCAAGCAGCAGTGTCCTCAAGCTTATAGTTATGCTTATGATGATAAATCGA GCACGTTTACTTGTCCTAGTGGAGGCAACTATTTGATTACCTTTTGTCCATGA
AA sequence Show only first row Show all	>Potri.001G221200.1 pacid=42790633 polypeptide=Potri.001G221200.1.p locus=Potri.001G221200 ID=Potri.001G221200.1.v4.1 annot-version=v4.1 MGSRMPFAIITFTLVIFLYACTHAGAQSVTFVVKNNCPYTVWPGTLTAAGRPPISSTGLTLATGASSSLSVPATWSGRLWARTQCSTDASGKFVCATADC ASGVIECNGAGAIPPASFAEFTLRGDGGKDFYDISLVDGFNTPISVTPQGGSTGCPTTSCAANVNAVCDPRLAVKGADGTVIACKSACLEFHQPQFCCTG EYSTPDKCPPTQYSMTFKQQCPQAYSYAYDDKSSTFTCPSGGNYLITFCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221200 [exp]	0	1
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.002G180300 [exp]	4.12	0.9700
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G188300 [exp]	6.16	0.9538	Pt-CHI5.2
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.015G039100 [exp]	6.32	0.9661
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221100 [exp]	9.79	0.9546
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Potri.015G086900 [exp]	13.92	0.9695
					Potri.001G021200 [exp]	13.96	0.9556
AT5G44680			DNA glycosylase superfamily pr...		Potri.001G074700 [exp]	15.42	0.9627
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Potri.008G183300 [exp]	17.40	0.9678	Pt-CYP86.2
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.003G094400 [exp]	19.44	0.9540
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119600 [exp]	22.20	0.9488

Compare expression of checked genes

Potri.001G221200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.