Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 272 / 3e-91 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 265 / 2e-88 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75040 247 / 9e-83 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G38670 247 / 4e-82 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G75050 246 / 5e-82 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 248 / 1e-81 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 244 / 2e-81 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 238 / 4e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 238 / 4e-78 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 234 / 1e-77 ATLP-3 thaumatin-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G221900 [exp] 478 / 9e-174 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G284305 [exp] 471 / 3e-171 AT1G75800 270 / 3e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221500 [exp] 467 / 2e-169 AT1G75800 269 / 6e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 462 / 2e-167 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221200 [exp] 437 / 9e-158 AT1G75800 254 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 429 / 3e-154 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221700 [exp] 426 / 3e-153 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221400 [exp] 419 / 2e-150 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G220900 [exp] 357 / 5e-126 AT1G20030 251 / 2e-83 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023897 [exp] 303 / 1e-104 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004410 [exp] 278 / 9e-95 AT1G20030 252 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10034534 [exp] 274 / 4e-92 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 266 / 4e-89 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 265 / 1e-88 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 259 / 6e-87 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 250 / 4e-83 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10032726 [exp] 241 / 3e-80 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10041899 [exp] 242 / 2e-79 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 239 / 1e-78 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.001G221800.1 pacid=42789621 polypeptide=Potri.001G221800.1.p locus=Potri.001G221800 ID=Potri.001G221800.1.v4.1 annot-version=v4.1 ATGGAGAGTCGTATGCCCATTGCTATAATTACCTTCACCCTCGTCATCTTCTTCTATGGAGCTCAATCTGTGACTTTCGACTTCAAAAACAACTGTCCAT ACACAGTCTGGCCAGGAACTCTAACGGCTGCTGGCGGTCCGTCTTTATCTTCAACTGGCTTCACATTGGCAACGGGTGCTTCATCTTCGCTGAGTGTCCC TGTCAATTGGTCTGGCCGCTTGTGGGCCAGAACGCAATGCTCTACAGATGCCTCGGGAAAGTTTGTTTGTGCTACTGCTGACTGTGCCTCTGGTGTCATA GAATGCAATGGAGCCGGTGCGATCCCACCAGCATCCTTGGCAGAATTTACTCTAAGCGGTGATGGTGGGAAAGATTATTACGATATAAGCCTTGTTGATG GCTTTAACCTCCCAATTTCGGTAACCCCGCAAGGAGGTTCTACTGGCTGCCCTTCTACAAGCTGTGCAGCTAACGTGAATGCTGTTTGTGATCCTAGTTT AGCAGTGAAAGGTTCAGATGGGACTGTGATTGCCTGCAAGAGTGCGTGTTTGGCATTTAACCAGCCGCAGTACTGCTGCACAGGAGACCATAATACAGCT GAAACATGTCCTCCTACCCAATATTCGATGACTTTCAAGCAGCAGTGTCCTCAAGCTTATAGTTATGCTTTTGATGATAAATCGAGCACGTTTACTTGTC CTAGTGGAGGCAACTATTTGATTACCTTTTGTCCATGA
AA sequence Show only first row Show all	>Potri.001G221800.1 pacid=42789621 polypeptide=Potri.001G221800.1.p locus=Potri.001G221800 ID=Potri.001G221800.1.v4.1 annot-version=v4.1 MESRMPIAIITFTLVIFFYGAQSVTFDFKNNCPYTVWPGTLTAAGGPSLSSTGFTLATGASSSLSVPVNWSGRLWARTQCSTDASGKFVCATADCASGVI ECNGAGAIPPASLAEFTLSGDGGKDYYDISLVDGFNLPISVTPQGGSTGCPSTSCAANVNAVCDPSLAVKGSDGTVIACKSACLAFNQPQYCCTGDHNTA ETCPPTQYSMTFKQQCPQAYSYAFDDKSSTFTCPSGGNYLITFCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221800 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G284305 [exp]	1.00	0.9842
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221500 [exp]	2.44	0.9509
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221700 [exp]	3.00	0.9457
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.014G159000 [exp]	4.00	0.9370	Pt-ACO1.4
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G008900 [exp]	5.74	0.9098
AT1G66920			Protein kinase superfamily pro...		Potri.017G035500 [exp]	8.48	0.9018
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.013G025800 [exp]	10.39	0.9091
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G016800 [exp]	14.28	0.9207
AT4G29330		DER1	DERLIN-1 (.1)		Potri.004G233100 [exp]	15.00	0.8824
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	17.32	0.9047

Compare expression of checked genes

Potri.001G221800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.