Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACCAL.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27030 303 / 1e-106 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G43810 299 / 1e-105 CAM7 calmodulin 7 (.1) AT3G56800 298 / 4e-105 ACAM-3, CAM3 calmodulin 3 (.1) AT2G41110 298 / 4e-105 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT5G21274 298 / 4e-105 ACAM-6, CAM6 calmodulin 6 (.1) AT1G66410 294 / 1e-103 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 294 / 1e-103 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G22930 236 / 5e-80 CML11 calmodulin-like 11 (.1) AT4G14640 232 / 6e-79 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT2G41090 187 / 1e-60 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024700 [exp] 299 / 1e-105 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 299 / 1e-105 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 299 / 1e-105 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.015G032600 [exp] 285 / 9e-100 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 283 / 3e-99 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.008G159300 [exp] 240 / 3e-82 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 238 / 2e-81 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G052800 [exp] 218 / 3e-73 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.013G040300 [exp] 196 / 7e-65 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041288 [exp] 299 / 2e-105 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 299 / 2e-105 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 299 / 2e-105 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 299 / 2e-105 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 255 / 7e-88 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10021487 [exp] 248 / 3e-85 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2) Lus10039391 [exp] 241 / 1e-82 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10001775 [exp] 190 / 3e-62 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10009176 [exp] 186 / 1e-60 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10041179 [exp] 159 / 8e-51 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.001G222200.2 pacid=42789314 polypeptide=Potri.001G222200.2.p locus=Potri.001G222200 ID=Potri.001G222200.2.v4.1 annot-version=v4.1 ATGGCCGATCAGCTCACCGAAGACCAGATCTCCGAGTTCAAGGAAGCTTTCAGCCTATTCGATAAGGACGGCGATGGTTGCATCACTACTAAGGAGCTGG GGACTGTGATGCGTTCATTGGGTCAAAACCCAACTGAGGCAGAGCTCCAGGACATGATAAATGAGGTTGATGCTGATGGGAATGGTACCATTGACTTCCC AGAGTTCCTCAACCTCATGGCCCGCAAGATGAAGGATACTGATTCTGAGGAGGAGCTCAAGGAAGCTTTCAGAGTTTTTGATAAGGACCAGAATGGCTTC ATTTCTGCTGCTGAGTTGCGTCATGTCATGACAAATCTCGGGGAGAAGCTGACAGATGAGGAGGTTGATGAGATGATCCGTGAGGCTGACGTGGATGGTG ATGGTCAGATCAACTACGAGGAATTTGTCAAAGTCATGATGGCCAAAAAAAGAAGGATGCAAATTGAAGAGAGGAAACAAGTTAGTAGAAAGGACTCCAT CTACAAGCAAGACAAAGACAAAGGTGCAAAGAAACGACGTAAGCGAGGCAAGTTTCGAGAATGCTTGATCCTCTAG
AA sequence Show only first row Show all	>Potri.001G222200.2 pacid=42789314 polypeptide=Potri.001G222200.2.p locus=Potri.001G222200 ID=Potri.001G222200.2.v4.1 annot-version=v4.1 MADQLTEDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGF ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKKRRMQIEERKQVSRKDSIYKQDKDKGAKKRRKRGKFRECLIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Potri.001G222200 [exp]	0	1	Pt-ACCAL.3
AT5G11960			Protein of unknown function (D...		Potri.018G060500 [exp]	3.16	0.9526
AT3G43810		CAM7	calmodulin 7 (.1)		Potri.009G021500 [exp]	3.74	0.9395	Pt-ACCAL.1
AT2G18990		TXND9	thioredoxin domain-containing ...		Potri.009G092700 [exp]	3.87	0.9425
AT1G12310			Calcium-binding EF-hand family...		Potri.003G115000 [exp]	4.47	0.9439
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.010G141900 [exp]	4.47	0.9481	Pt-SAR1.2
AT3G12110		ACT11	actin-11 (.1)		Potri.008G055500 [exp]	7.74	0.9468	ACT4,Pt-PEAC14.2
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.004G133500 [exp]	8.42	0.9021	Pt-CDC2.1,1
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	8.48	0.9366
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.011G110900 [exp]	8.66	0.9009	Pt-GF14.3
AT1G78870		UBC35 ,UBC13A	UBIQUITIN CONJUGATING ENZYME 1...		Potri.011G111400 [exp]	9.16	0.9238

Compare expression of checked genes

Potri.001G222200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.