Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15010 446 / 7e-157 Mitochondrial substrate carrier family protein (.1.2.3) AT1G79900 52 / 3e-07 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G19760 44 / 8e-05 Mitochondrial substrate carrier family protein (.1) AT5G07320 44 / 0.0001 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT1G34065 42 / 0.0004 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G66380 41 / 0.0008 ATFOLT1 folate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053900 [exp] 52 / 3e-07 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.008G210000 [exp] 49 / 3e-06 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.001G004500 [exp] 45 / 4e-05 AT5G19760 519 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.003G220400 [exp] 45 / 4e-05 AT5G19760 498 / 6e-180 Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 44 / 0.0001 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 42 / 0.0004 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030299 [exp] 514 / 0 AT4G15010 485 / 2e-172 Mitochondrial substrate carrier family protein (.1.2.3) Lus10001980 [exp] 512 / 0 AT4G15010 489 / 7e-174 Mitochondrial substrate carrier family protein (.1.2.3) Lus10026395 [exp] 42 / 0.0005 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 42 / 0.0005 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.001G222400.1 pacid=42790692 polypeptide=Potri.001G222400.1.p locus=Potri.001G222400 ID=Potri.001G222400.1.v4.1 annot-version=v4.1 ATGGGTGAGTGGCTGAAGAACCAGTTGTTCGTAAGCCATGCGATTGCAGCAGTAGGATCAGTAACAGTTGCCACTGCTGTCACTTACCCACTTGATACTA TCAAAGTTCTTATTCAGGTTGGTTCGAATTCTGGTAAACAATTAACATCACTTCAGGCTTTAAATAGAGTTCGTTCTTTATCTGGGAATTCAGGCTTGTA TAGCGGTTTTGGGTGGTTGACTGTAGGCAAAACTCTTGGCCTTGGAGCTCGGTTTGGAGCCTATGAAATTTTAACTGCTTATTGTAAAGATGGTCGAGAA TACAGCTACGTGTATGTCTCTGAGGCCCTTATGGCTGGAATGGTCGCTGGTGCATTGGAATCACTTGTATGCTCTCCATTTGAACTTATTAAACTTCGTG CACAGGTTACATCTGCATCTCGAGTTCCAAGATCTACCCCTGTTACTGAAAATAGAGCTGTCGCACCCATTATTGCTAAATTACTACCTGGACATACTCC AGATAAGAAGGCATTGAACCATTTTGTTACCCTTTTATCCACCCTAACCAGTAAGCATCCAAATCTGGCTGGTGCCTTGCTAGAGTACCCATGGATGATG ACTGGGTCTGGGAAGGCGCCATCAGTCTGTGATGTACGGAAGCCATCAAGCATCATCTCTTTGGAAGGATGGGGTGCACTGTGGAGAGGGATCAGATCAG GACTTGTTCGAGATTCTATTTTTGGTGGGGTATTCTTCAGTGGCTGGCAATTTATGCACGATGTAATGCTTAACTGGAAGGCAGTTGGGATGGATCCTAT ACCCAGGTCTAATGAAGAAGTCGGCTCACTCTCTCCTCTATCTGTTAGTCTTGCTGCTGGATTTTCTGGTTCCATTGCTGCAGCTGCATCTCATTGTTTT GACACTGCCAAATGTCGATCACAGTGCACAGTGCTGCCCAAGTATATTTCTATGGAGAGGAACTTGTTGAGATGGACACGACCAGGGAATAGATTTGAGA GGTATACAGGGATCCACCCTGCAGACAGGAATATCTTGTTTCGTGGCCTGGGGTTGCGAATGGCTCGCAGTGGATTTGCATCGTTTATGATTGTTGGGAG TTATTATTTGACGGTCAATTACCTTGTTTCAGAGGGACCCAAGAAAAGAGGATCAAAAGAGAACAAGTTGTTGTAA
AA sequence Show only first row Show all	>Potri.001G222400.1 pacid=42790692 polypeptide=Potri.001G222400.1.p locus=Potri.001G222400 ID=Potri.001G222400.1.v4.1 annot-version=v4.1 MGEWLKNQLFVSHAIAAVGSVTVATAVTYPLDTIKVLIQVGSNSGKQLTSLQALNRVRSLSGNSGLYSGFGWLTVGKTLGLGARFGAYEILTAYCKDGRE YSYVYVSEALMAGMVAGALESLVCSPFELIKLRAQVTSASRVPRSTPVTENRAVAPIIAKLLPGHTPDKKALNHFVTLLSTLTSKHPNLAGALLEYPWMM TGSGKAPSVCDVRKPSSIISLEGWGALWRGIRSGLVRDSIFGGVFFSGWQFMHDVMLNWKAVGMDPIPRSNEEVGSLSPLSVSLAAGFSGSIAAAASHCF DTAKCRSQCTVLPKYISMERNLLRWTRPGNRFERYTGIHPADRNILFRGLGLRMARSGFASFMIVGSYYLTVNYLVSEGPKKRGSKENKLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	0	1
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.001G267400 [exp]	1.00	0.8618	HF.1
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	2.44	0.8457
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.017G120100 [exp]	2.82	0.8553
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Potri.014G198300 [exp]	3.46	0.8378
AT2G47790			Transducin/WD40 repeat-like su...		Potri.014G130600 [exp]	6.32	0.8149
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.004G217900 [exp]	7.41	0.8194
AT3G05340			Tetratricopeptide repeat (TPR)...		Potri.013G021100 [exp]	7.74	0.8024
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Potri.010G189500 [exp]	8.06	0.8021
AT3G07750			3'-5'-exoribonuclease family p...		Potri.014G166200 [exp]	8.24	0.7996
AT3G56900			Transducin/WD40 repeat-like su...		Potri.016G030400 [exp]	10.95	0.8002

Compare expression of checked genes

Potri.001G222400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.