Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53530 522 / 0 VPS26A vacuolar protein sorting 26A (.1) AT4G27690 521 / 0 VPS26B vacuolar protein sorting 26B (.1.2) AT1G48550 47 / 5e-06 Vacuolar protein sorting-associated protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G021200 [exp] 585 / 0 AT5G53530 519 / 0.0 vacuolar protein sorting 26A (.1) Potri.006G081300 [exp] 535 / 0 AT4G27690 566 / 0.0 vacuolar protein sorting 26B (.1.2) Potri.018G150900 [exp] 528 / 0 AT4G27690 542 / 0.0 vacuolar protein sorting 26B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037421 [exp] 543 / 0 AT5G53530 508 / 0.0 vacuolar protein sorting 26A (.1) Lus10023242 [exp] 515 / 0 AT5G53530 538 / 0.0 vacuolar protein sorting 26A (.1) Lus10008868 [exp] 488 / 5e-176 AT5G53530 503 / 0.0 vacuolar protein sorting 26A (.1) Lus10041291 [exp] 290 / 1e-96 AT5G53530 432 / 3e-153 vacuolar protein sorting 26A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0135 [poplar] [flax] Arrestin_N-like PF03643 [poplar] [flax] Vps26 Vacuolar protein sorting-associated protein 26
Representative CDS sequence Show only first row Show all	>Potri.001G222500.1 pacid=42793500 polypeptide=Potri.001G222500.1.p locus=Potri.001G222500 ID=Potri.001G222500.1.v4.1 annot-version=v4.1 ATGAATTTCTTAGTTGGAGCTTTTAAACCACCATGTAGTGTTTCTATCATTTTTGCTGATGGAAGAACACGCAAACAGGTTCCATTAAAGAAGGAAAATG GCCAAACGGTCATGGTTCCTCTCTTCCAAAGTCAAGAAAACATTGTTGGGGAGGTTGTCATAGAACCAGTTCAAGGGAAGAAGGTTGAACACAATGGTGT TAAAATCGAGCTGCTTGGTCAAATAGAATTGTATTTTGATCGAGGCAACTATTATGATTTTACATCTCTTGTGCGTGAACTTGATGTACCTGGAGAATTA TATGAAAGAAAGACATATCCCTTTGAATTTTCTACTGTGGAAATGCCGTATGAGTCCTACAATGGAGTGAATGTGAGGCTTAGGTATATATTGAAAATGA CAATCAGTCGAAATTATGTCAGCAACATTGTCGAGAGCCAGGATTTTGTGGTTCACAACTACACTCCGCTTCCATCAATCAATAACAGCATCAAGATGGA AGTTGGAATTGAGGACTGTCTTCATATTGAATTTGAATACAGTAAAAGCAAGTACCACTTGAAGGATGTCATCGTTGGCAAAATATACTTTCTTCTGGTG AGAATTAAGATTAAGAATATGGAGCTTGAGATCAGGCGCCGTGAGTCGACGGGATCAGGGCCTAATACATATGTTGAGACAGAGACCCTTGCAAAATTTG AATTGATGGATGGTGCTCCTGTCAGAGGTGAATCGATTCCAGTAAGACTGTTCCTGAGTCCATACGAGTTGACACCCACATATCGCAACATTAACAACAA ATTCAGTGTGAAGTACTACTTGAATCTTGTTCTAGTTGATGAAGAAGATCGGCGGTATTTTAAGCAGCAAGAAATCACAGTTTATCGGCTTCTTCCAACT CCCTGA
AA sequence Show only first row Show all	>Potri.001G222500.1 pacid=42793500 polypeptide=Potri.001G222500.1.p locus=Potri.001G222500 ID=Potri.001G222500.1.v4.1 annot-version=v4.1 MNFLVGAFKPPCSVSIIFADGRTRKQVPLKKENGQTVMVPLFQSQENIVGEVVIEPVQGKKVEHNGVKIELLGQIELYFDRGNYYDFTSLVRELDVPGEL YERKTYPFEFSTVEMPYESYNGVNVRLRYILKMTISRNYVSNIVESQDFVVHNYTPLPSINNSIKMEVGIEDCLHIEFEYSKSKYHLKDVIVGKIYFLLV RIKIKNMELEIRRRESTGSGPNTYVETETLAKFELMDGAPVRGESIPVRLFLSPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITVYRLLPT P

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.001G222500 [exp]	0	1
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Potri.001G417300 [exp]	10.00	0.7819	FIE.1,PGE901
AT5G01450			RING/U-box superfamily protein...		Potri.016G116300 [exp]	12.88	0.8039
					Potri.005G045300 [exp]	14.14	0.7884
AT1G68300			Adenine nucleotide alpha hydro...		Potri.010G123200 [exp]	15.58	0.8041
AT5G14220		HEMG2, MEE61, P...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G333500 [exp]	18.16	0.7782
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Potri.001G327300 [exp]	21.33	0.7157
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.017G084300 [exp]	22.97	0.7946
AT3G05010			Protein of unknown function, t...		Potri.013G031200 [exp]	27.65	0.7195
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.017G069300 [exp]	31.46	0.7485
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.009G040600 [exp]	31.62	0.7394

Compare expression of checked genes

Potri.001G222500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.