Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CIPK3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26980 752 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 706 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G30270 642 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 624 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G35410 536 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 526 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G21222 476 / 1e-161 protein kinase family protein (.1) AT5G45820 445 / 9e-155 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 442 / 4e-153 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G30960 437 / 1e-151 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G021000 [exp] 860 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 648 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 637 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 635 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G119200 [exp] 634 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G130500 [exp] 548 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 532 / 0 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.010G002500 [exp] 465 / 2e-162 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.002G109000 [exp] 465 / 2e-162 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022590 [exp] 723 / 0 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10042816 [exp] 640 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 638 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10002692 [exp] 625 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 625 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10021488 [exp] 619 / 0 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10019411 [exp] 553 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 514 / 0 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10021852 [exp] 463 / 1e-161 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 462 / 3e-161 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.001G222600.18 pacid=42788697 polypeptide=Potri.001G222600.18.p locus=Potri.001G222600 ID=Potri.001G222600.18.v4.1 annot-version=v4.1 ATGAGTCAACCTAAAATCAAGCGTAGAGTGGGTAAATATGAAGTGGGAAGGACAATTGGTGAAGGAACGTTTGCAAAAGTAAAGTTTGCGAGGAATTCTG AGACAGGGGAACCTGTGGCCCTGAAGATCCTTGATAAAGAGAAGGTTCTCAAACACAAGATGGCTGAACAGATCAAGCGGGAGATTGAGACAATGAAGCT TATCAAGCATCCAAATGTTGTTCGATTATATGAGGTGATGGGAAGTAAGACAAAGATATTTATTGTTTTGGAGTTTGTCACCGGGGGAGAGCTTTTTGAC AAAATTGTAAACCATGGACGGATGAGAGAAGATGAAGCTCGGAGATATTTCCAGCAGCTTATCAATGTAGTGGACTATTGCCACAGCAGGGGTGTTTTTC ACAGAGACCTTAAGCCAGAAAATTTGTTGTTGGATGCTTATGGGAACCTCAAAGTTTCAGATTTTGGGTTGAGTGCGCTGTCCCAACAAGTCAGGGATGA TGGCCTGCTTCATACAACTTGTGGAACTCCAAATTATGTCGCTCCTGAGGTTCTTAATGATAGAGGTTACGATGGGACTACTGCAGATTTGTGGTCATGT GGAGTGATACTTTTTGTATTGCTAGCAGGGTATTTGCCTTTCGATGATTCAAATGTTATGAACCTGTATAAAAAAATCTCAGCAGCTGAATTTACTTGCC CCCCTTGGCTCTCTTTTGGTGCCATGAAATTGATAACTCGAATTTTGGATCCCAACCCTATGACTCGCATCACCATACCTGAAATCCTGGTAGATGAATG GTTTAAGAAAGGTTATAAGCCTCCTGTGTTTGAAGAGAAAGAGGACACCAACTTGGATGATGTTGAAGCTGTTTTTAAGGACTCAGAAGAACACCATGTA ACAGAGAAGAAGGAAGAGGAGCAACCAACAGCTATGAATGCATTCGAGTTAATTTCTATGTCTAAAGGACTAAATCTTGGGAATTTGTTTGATGGAGAAC AGCAGGAATTTAAGAGGGAAACGAGGTTCACGTCTAGATGCCCTGCCAATGAAATAATTCACAAGATTGAAGAAGCTGCCAAGCCCCTTGGTTTTGATGT CCACAAGAAAAATTACAAGATGAGGCTTGAGAATGTGAAGGCTGGGAGAAAGGGAAACCTGAATGTTGCTACCGAGATATTTCAAGTGGCACCTTCCCTT CATATGGTTGAAGTGCGTAAAGCAAAGGGAGACACTTTGGAGTTCCATAAGTTCTATAAAAGCCTTTCAACCTGCCTTGATGATGTTGTCTGGAAAACTG AGGAGGACATGCAAGAAACGAAGTAA
AA sequence Show only first row Show all	>Potri.001G222600.18 pacid=42788697 polypeptide=Potri.001G222600.18.p locus=Potri.001G222600 ID=Potri.001G222600.18.v4.1 annot-version=v4.1 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIKREIETMKLIKHPNVVRLYEVMGSKTKIFIVLEFVTGGELFD KIVNHGRMREDEARRYFQQLINVVDYCHSRGVFHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGTTADLWSC GVILFVLLAGYLPFDDSNVMNLYKKISAAEFTCPPWLSFGAMKLITRILDPNPMTRITIPEILVDEWFKKGYKPPVFEEKEDTNLDDVEAVFKDSEEHHV TEKKEEEQPTAMNAFELISMSKGLNLGNLFDGEQQEFKRETRFTSRCPANEIIHKIEEAAKPLGFDVHKKNYKMRLENVKAGRKGNLNVATEIFQVAPSL HMVEVRKAKGDTLEFHKFYKSLSTCLDDVVWKTEEDMQETK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Potri.001G222600 [exp]	0	1	Pt-CIPK3.1
AT2G14520			CBS domain-containing protein ...		Potri.009G082300 [exp]	3.00	0.7994
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.018G104700 [exp]	6.00	0.7732
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.005G213500 [exp]	17.32	0.7378	Pt-SULTR3.5
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	25.23	0.7127
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G299000 [exp]	25.98	0.7000
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.008G078800 [exp]	28.98	0.7002
AT2G40070			unknown protein		Potri.016G114900 [exp]	36.66	0.6973
AT3G60810			unknown protein		Potri.002G148400 [exp]	36.87	0.7350
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.017G101700 [exp]	44.02	0.7101
AT1G05870			Protein of unknown function (D...		Potri.007G126700 [exp]	45.49	0.6817

Compare expression of checked genes

Potri.001G222600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.